PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn156931
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 264aa    MW: 28828.5 Da    PI: 7.8945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn156931genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-1177123354
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++h+e+ErrRR+riN  +++Lr l+P       +K++Ka+ L +++  +k+L
  Achn156931  77 KNHSEAERRRRERINAHLSTLRGLVPCT-----EKMDKAALLAEVISQVKQL 123
                 58*************************8.....8************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.53574123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-977123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-1378125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1378131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-1180129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2603.5E-5160209No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGSYFWDSNT SNASKFSGIF GPNSGNLGGF CGNLRGGSVS VSQSLVLDSE RSEIVKAPAG  60
VGKKNEVSEE KIMAALKNHS EAERRRRERI NAHLSTLRGL VPCTEKMDKA ALLAEVISQV  120
KQLKKTATET SEGLLIPMDT DEVRVESHKE GDGSFSFRAS LCCDYRPELL SELRQALEAL  180
HLNMVKAEIS TLGSRVKNVF VFTSVKETNS DNSEECQILV NSVHQAFSTI LDKISAAAEY  240
LPRTTLPNKR RRISFFDSSS SSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287ERRRRE
2248252KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028092033.11e-127transcription factor bHLH30-like
TrEMBLA0A2R6QAC40.0A0A2R6QAC4_ACTCH; Transcription factor bHLH30 like
STRINGXP_009348588.11e-100(Pyrus x bretschneideri)
STRINGXP_004295576.11e-99(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67302230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-35bHLH family protein