PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn156901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 331aa    MW: 37149.4 Da    PI: 8.5995
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn156901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.17e-1625115287
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 Wt++ + +L++a  ++  ++++g+l++++W+ev++++     + ++ +r+ +qCk++++ l+k+yk++k++ +  +  +ss +p+f++l+a
  Achn156901  25 WTEEATATLVDAWGRRYLDVNKGNLRQKDWREVADAVnarhgHTKKTTRTDTQCKNRIDTLKKKYKAEKARISASNGVVSSPWPFFSRLDA 115
                 *************************************99888888999*************************99999999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-2523116No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGEFTEFSTP QKAPSRPFPF REDFWTEEAT ATLVDAWGRR YLDVNKGNLR QKDWREVADA  60
VNARHGHTKK TTRTDTQCKN RIDTLKKKYK AEKARISASN GVVSSPWPFF SRLDALIGSA  120
KKLPTPPPLA YRKPPFAQAA AVVLPHKRPF PANDELYAAA DESVKKLLPP MALPLPFRKL  180
PCAAAMPQKG RFPVVDESYA AEEESDDLGT SEDIEEEDGE GMRRVARAIE RFGEMYERVE  240
AEKQRQMVEL EMQRMEFAKD LEVSRMQLFM DTQVQLEKMK QGKRVGSDGE RSVALEIIQA  300
KMKAGLGGRS AAALLGMLYD YSVQEAVQSG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024974645.11e-103trihelix transcription factor ASIL2-like
RefseqXP_024974646.11e-103trihelix transcription factor ASIL2-like
RefseqXP_024974647.11e-103trihelix transcription factor ASIL2-like
TrEMBLA0A2R6QAA80.0A0A2R6QAA8_ACTCH; Trihelix transcription factor
STRINGVIT_10s0003g01300.t012e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.11e-51sequence-specific DNA binding transcription factors