PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn154251 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 206aa MW: 24104.2 Da PI: 8.6648 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 41.6 | 3.2e-13 | 1 | 47 | 38 | 87 |
trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 mre+g++rs++qCk+kw+nl +ryk + ++e ++ ++++p++++lea Achn154251 1 MREKGYNRSAEQCKSKWKNLVTRYKGCGNMELEG---MRQQFPFYNELEA 47 89******************************97...56679*****985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.1E-11 | 1 | 48 | No hit | No description |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 206 aa Download sequence Send to blast |
MREKGYNRSA EQCKSKWKNL VTRYKGCGNM ELEGMRQQFP FYNELEAIFA ARMERMLWIE 60 AEGGSSSGTK NKGVAIASDN EDDNEESDRD KAGSRKKKGK VHKSGNSPSS GGNISVLKET 120 LEEFMKQQMQ IEMEWLKAYK AKEEERRLRE MEWRQTMEAL ESERIVMERG WRQRDEQRRM 180 IEEARADNRD ALISALLNKF RREDM* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011095020.1 | 1e-75 | trihelix transcription factor GT-3b | ||||
Refseq | XP_020553261.1 | 1e-75 | trihelix transcription factor GT-3b | ||||
Swissprot | Q9SDW0 | 7e-42 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A2R6RXC9 | 1e-81 | A0A2R6RXC9_ACTCH; Trihelix transcription factor GT-3b like | ||||
STRING | XP_010264622.1 | 1e-72 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4187 | 23 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38250.1 | 7e-35 | Trihelix family protein |