PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn154151
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 339aa    MW: 37473.8 Da    PI: 8.4115
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn154151genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.8e-11991415599
                 ETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3  55 ksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 +++r++lt+GW+ Fv+ ++L +gD++vF   + +++ l+v+++r+
  Achn154151  99 TPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RAENGDLCVGIRRA 141
                 6789*************************..4488999****997 PP
2Auxin_resp117.11.5e-38166249183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ ++++++FevvY+Prast+eF+v+++ v++al+v+++ GmRfkmafetedss++++ +Gt+++v+ +d++rWpnS+Wr+L+
  Achn154151 166 AATLVANGQPFEVVYYPRASTPEFCVRASLVKAALQVQWCSGMRFKMAFETEDSSRISWfMGTISSVQVADSIRWPNSPWRLLQ 249
                 68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-1178142IPR015300DNA-binding pseudobarrel domain
CDDcd100173.97E-798140No hitNo description
PfamPF023627.2E-999141IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-1399144IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.122102142IPR003340B3 DNA binding domain
PfamPF065073.4E-34166249IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMDTEKCLDS QLWHACAGSM VQMPPVNTKV FYFPQGHAEH ASGNVDFRNF PKVPSFVACR  60
VLGIKFMADP ETDEDAPDKP TSFAKTLTQS DANNGGGGTP RRHLLTTGWS TFVNHKKLVA  120
GDSIVFLRAE NGDLCVGIRR AKRGIGAGSG STTRREKVRP ESVIEAATLV ANGQPFEVVY  180
YPRASTPEFC VRASLVKAAL QVQWCSGMRF KMAFETEDSS RISWFMGTIS SVQVADSIRW  240
PNSPWRLLQV TWDEPELLQN VKHISPWLVE LVSNIPTIHL SPFSPPRKKL RFPQHPDFPL  300
DCQFQLPTFS GTLFGPTSPF NCLPDNPPAG MQGARHAQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-53827051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028091358.10.0auxin response factor 18-like
SwissprotQ653H71e-156ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2R6R8490.0A0A2R6R849_ACTCH; Auxin response factor
STRINGXP_002519531.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-141auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]