PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn153601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | LBD | ||||||||
Protein Properties | Length: 122aa MW: 13604.3 Da PI: 3.7722 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 59.7 | 8e-19 | 8 | 63 | 45 | 100 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+aela++++e Achn153601 8 ASVELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAELAKTQAE 63 556789**********************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.468 | 1 | 64 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.6E-17 | 10 | 61 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MLSQFVAASV ELPESQRADA VSSMVYEANA RIRDPVYGCA GAICQLQKQV SELQAELAKT 60 QAELLTMQCQ QNNLMALFCM EASQISQEPI FPQHQEDEQE QVLYDNAIFS LDDANWETLW 120 A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-18 | 11 | 71 | 58 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-18 | 11 | 71 | 58 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028100189.1 | 2e-48 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 9e-29 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A2R6RTS5 | 2e-74 | A0A2R6RTS5_ACTCH; LOB domain-containing protein | ||||
STRING | EOY18548 | 7e-43 | (Theobroma cacao) | ||||
STRING | Solyc11g072470.1.1 | 3e-43 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 4e-31 | LOB domain-containing protein 11 |