PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn153511
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 466aa    MW: 51233.2 Da    PI: 8.0461
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn153511genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-17165214155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Achn153511 165 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 214
                 78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-9165214IPR001471AP2/ERF domain
SuperFamilySSF541715.23E-16165224IPR016177DNA-binding domain
SMARTSM003801.4E-32166228IPR001471AP2/ERF domain
PROSITE profilePS5103217.794166222IPR001471AP2/ERF domain
CDDcd000185.43E-12166224No hitNo description
Gene3DG3DSA:3.30.730.104.1E-17166222IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-5257301IPR016177DNA-binding domain
CDDcd000184.70E-12257302No hitNo description
SMARTSM003802.8E-10258306IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MLDLNVDAVT VDSTRDEVAT KIAVEKLQDG NDSGTSNSSV VSADDAPNNI ADEDSSSNQI  60
APSNNTSIFD FDVLNKGRST SVGRIAGIED EIDRNLTPAL VTRQFFPVGD LEKIRSGSSS  120
ATSLLRPQWL NLSFPDTRGG DELRNIQTQK QQVKKSRRGP RSRSSQYRGV TFYRRTGRWE  180
SHIWDCGKQV YLGGFDTAHA AARAYDRAAI KFRGVDADIN FNISDYEEDM TQMKNLTKLE  240
FVHILRRQST GFPRGSSKYK GETLHKCGRW EARMGQLLGK KAYDKAAIKC NGREAVTNFE  300
PSTYEGEMSM DANNEGGVTG QNLDLSLWIS PPTDVPKGND SFRDFQLQCA AYELRDTKRL  360
KLESSVSAPM DGQNICGLTM AAKRSPLCSG IYPSFTPNCE VRTLGKAAET FSQPAFLNWA  420
WQVQSHNVVS PVALFPTAAS SGFASSPRAL SPPLTLQTPQ NKTVH*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028125724.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK035e-95RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2R6RTT40.0A0A2R6RTT4_ACTCH; Ethylene-responsive transcription factor RAP2-7 like
STRINGXP_010087870.11e-135(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-96related to AP2.7