PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn152441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 302aa    MW: 35635.6 Da    PI: 8.5927
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn152441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.64.4e-2558140186
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 +W+ qe+++ + +r e++ ++ ++k++k lWe ++ km+++g++rs++qCk+kw+nl +ryk ++++e ++    ++++py+++l+
  Achn152441  58 QWSVQETRDFLMIRAELDPTFMETKRNKLLWEVIATKMKDKGYNRSAEQCKCKWKNLVTRYKGCETMEPEG---MRQQFPYYNELQ 140
                 7********************************************************************97...56679*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.5E-455117IPR001005SANT/Myb domain
CDDcd122032.52E-2557122No hitNo description
PfamPF138371.9E-2058142No hitNo description
PROSITE profilePS500907.37559115IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKDTWTAVER VHTCDHDTNR VNRLIYGHLK EKITAHNKIQ SHHPHIAVNV DAGDRFPQWS  60
VQETRDFLMI RAELDPTFME TKRNKLLWEV IATKMKDKGY NRSAEQCKCK WKNLVTRYKG  120
CETMEPEGMR QQFPYYNELQ AIFTARMQRM LWMEAEGGGA SGLKKKGVAL SSDDEDDNEE  180
SEGEKGGGGT KKKRKVLKSA STNAISGNIN SLKEVLEEFM KQQMQMEMEW IKAYEAREEE  240
RRLKEMEWRQ AMEALENERV MMDRRWRERE EQRRMREEAR AEKRDALITA LVNKLRREDH  300
M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A2e-1255138386DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264622.11e-121PREDICTED: trihelix transcription factor GT-3b-like isoform X2
RefseqXP_019054174.11e-121PREDICTED: trihelix transcription factor GT-3b-like isoform X1
SwissprotO804502e-71TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A2R6R8F60.0A0A2R6R8F6_ACTCH; Trihelix transcription factor GT-3b like
STRINGXP_010264622.11e-121(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-57Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]