PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn149871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 752aa MW: 82725.9 Da PI: 7.7617 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.7 | 2.1e-08 | 689 | 746 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C..........TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as.......kapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L+el P+ + + + + a++L +AveYIk+Lq Achn149871 689 SIAERVRRTRISARMRKLQELFPNmDKtetevfcVCKWQQANTADMLDLAVEYIKDLQ 746 689*********************888*******8888999****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF109905 | 1.44E-16 | 149 | 215 | IPR000061 | SWAP/Surp |
SMART | SM00648 | 3.7E-15 | 162 | 216 | IPR000061 | SWAP/Surp |
Pfam | PF01805 | 3.3E-11 | 163 | 211 | IPR000061 | SWAP/Surp |
PROSITE profile | PS50128 | 13.133 | 164 | 207 | IPR000061 | SWAP/Surp |
PROSITE profile | PS50888 | 13.376 | 683 | 745 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-9 | 686 | 750 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.20E-8 | 687 | 750 | No hit | No description |
SMART | SM00353 | 1.2E-4 | 689 | 751 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.4E-5 | 689 | 746 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-9 | 689 | 749 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
METTTSLRLG ARKIIGPLPM EKGKSSGLFV NDGSFMERFK QLQQEKDAAL DESKPGPTVS 60 EASIPKPVIT KTSFGSKAND SLKTTPVSSG KLAFSLKQKS KLVAPAVKLS EDDEEEENEK 120 DAGYASRNGL AKRQKLGQPD ASQQSSKQVD VAPPPPSDPT VKKVADKLAS FVAKNGRPFE 180 HITRQKNPGD TPFKFLFDES CADYKYYEYQ LREEEKALLQ STDSQSPQSG GTSTAAPSSI 240 SGSQRSRQQR PNYQTPASAL YESSECSAPA VAVADPISRM EFFMKKAAQE ERRRQPKQSK 300 DEMPPPASLQ GEGLGSSKSG IADPIMAGNV KKDHLGVGAH QPGEVTPEDD IYEQYKKRMM 360 LGYRHRPNPL NPNEELTKNK DFMNSDLYQP QQQPQHNNNS SGLMRYRSAP SSFFASLVDG 420 GSDGCEGFLS PQSSSPQSES MFATLIPSNG DSNSHDLQFP MTMKHETPEE NQYSASASIY 480 GTSIDLANHT NSVEQGKMMS GGNCSNLTRQ RSSPAGFFSD LTAENGFGDM RDVGSFKLGN 540 GTNGKASPSN RLNGFINFSS GPSSCSRFMP QIAENGNEFI EASSPENRHL SNGSNRNFLP 600 SFQNDSWNDS DFTSLKRNRD GDEKRFSGFS LLESQNGDSR NYTTGLTHHL SLPKTSAEMA 660 AVEKFLQFQQ DSVPCKTRAR RGCATHPRSI AERVRRTRIS ARMRKLQELF PNMDKTETEV 720 FCVCKWQQAN TADMLDLAVE YIKDLQKEVK V* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028058918.1 | 1e-152 | transcription factor bHLH130-like | ||||
TrEMBL | A0A2R6RD14 | 0.0 | A0A2R6RD14_ACTCH; Transcription factor bHLH130 like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 5e-56 | bHLH family protein |