PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn149871
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 752aa    MW: 82725.9 Da    PI: 7.7617
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn149871genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.72.1e-08689746655
                 HHHHHHHHHHHHHHHHHHHCTSCC.C..........TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPk.as.......kapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri  ++ +L+el P+ +          + +  + a++L +AveYIk+Lq
  Achn149871 689 SIAERVRRTRISARMRKLQELFPNmDKtetevfcVCKWQQANTADMLDLAVEYIKDLQ 746
                 689*********************888*******8888999****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1099051.44E-16149215IPR000061SWAP/Surp
SMARTSM006483.7E-15162216IPR000061SWAP/Surp
PfamPF018053.3E-11163211IPR000061SWAP/Surp
PROSITE profilePS5012813.133164207IPR000061SWAP/Surp
PROSITE profilePS5088813.376683745IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-9686750IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-8687750No hitNo description
SMARTSM003531.2E-4689751IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.4E-5689746IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-9689749IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0003723Molecular FunctionRNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
METTTSLRLG ARKIIGPLPM EKGKSSGLFV NDGSFMERFK QLQQEKDAAL DESKPGPTVS  60
EASIPKPVIT KTSFGSKAND SLKTTPVSSG KLAFSLKQKS KLVAPAVKLS EDDEEEENEK  120
DAGYASRNGL AKRQKLGQPD ASQQSSKQVD VAPPPPSDPT VKKVADKLAS FVAKNGRPFE  180
HITRQKNPGD TPFKFLFDES CADYKYYEYQ LREEEKALLQ STDSQSPQSG GTSTAAPSSI  240
SGSQRSRQQR PNYQTPASAL YESSECSAPA VAVADPISRM EFFMKKAAQE ERRRQPKQSK  300
DEMPPPASLQ GEGLGSSKSG IADPIMAGNV KKDHLGVGAH QPGEVTPEDD IYEQYKKRMM  360
LGYRHRPNPL NPNEELTKNK DFMNSDLYQP QQQPQHNNNS SGLMRYRSAP SSFFASLVDG  420
GSDGCEGFLS PQSSSPQSES MFATLIPSNG DSNSHDLQFP MTMKHETPEE NQYSASASIY  480
GTSIDLANHT NSVEQGKMMS GGNCSNLTRQ RSSPAGFFSD LTAENGFGDM RDVGSFKLGN  540
GTNGKASPSN RLNGFINFSS GPSSCSRFMP QIAENGNEFI EASSPENRHL SNGSNRNFLP  600
SFQNDSWNDS DFTSLKRNRD GDEKRFSGFS LLESQNGDSR NYTTGLTHHL SLPKTSAEMA  660
AVEKFLQFQQ DSVPCKTRAR RGCATHPRSI AERVRRTRIS ARMRKLQELF PNMDKTETEV  720
FCVCKWQQAN TADMLDLAVE YIKDLQKEVK V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058918.11e-152transcription factor bHLH130-like
TrEMBLA0A2R6RD140.0A0A2R6RD14_ACTCH; Transcription factor bHLH130 like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-56bHLH family protein