PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn147821
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 374aa    MW: 42215.6 Da    PI: 6.1482
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn147821genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11199242755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++Er+RR+++N++f  L  ++  +     +K++Ka++L  A++Y+k+Lq
  Achn147821 199 IAERKRREKLNQRFIALSAIIHGL-----TKVDKASVLGDAIKYLKHLQ 242
                 79*********************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.329192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.67E-10197246No hitNo description
SuperFamilySSF474595.23E-15197256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13198255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9199242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSSYSECKFR LLNLYLAILD LLVTHKATVF MDDSLEKWIS ELDLDDYSFL DEYQTTFGGF  60
NYVDEPTPTP VNAMVKKEDL QLQQQQSSSS KSHNWSSSTF VNGSSLEICD NGFEKPSKIT  120
KHTTQNEAML EEASHKASLS SHISLEGSPP QQLNRNPENN SGAKDEVVSN DNKSNAPKVG  180
QKRSNAVIRT PSETQDRVIA ERKRREKLNQ RFIALSAIIH GLTKVDKASV LGDAIKYLKH  240
LQEHVKLLEE QITKKSEESV VFVKKSQFSW DDDTSSCQEN FDGRMKEVLP EIEARISEKN  300
VLIRVHSEKQ KGFAVKLLSE IEKNHLSVVN SSFLPFGQFA MDITVVAQMD SEFCMTEKDL  360
VKNLHSAFLK FVV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200205ERKRRE
2201206RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028055982.11e-124transcription factor bHLH18-like
RefseqXP_028055983.11e-124transcription factor bHLH18-like
SwissprotQ9T0722e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2R6RKW40.0A0A2R6RKW4_ACTCH; Transcription factor bHLH18 like
STRINGEOX918224e-88(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-50bHLH family protein