PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn147511
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 667aa    MW: 72828.3 Da    PI: 6.3092
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn147511genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07268288526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f++ G C++Gd C +aHg
  Achn147511 268 PCPDFRK-GACRRGDMCEYAHG 288
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.46E-1612139IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.3E-1714141IPR020683Ankyrin repeat-containing domain
PfamPF127963.4E-1053126IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00715787IPR002110Ankyrin repeat
CDDcd002044.58E-1557135No hitNo description
PROSITE profilePS5029719.46557165IPR020683Ankyrin repeat-containing domain
SMARTSM002482.6E-492124IPR002110Ankyrin repeat
PROSITE profilePS5008812.74392127IPR002110Ankyrin repeat
SMARTSM003564.0E-6263289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4267290IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582268290IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-5268288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4296326IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.456298322IPR000571Zinc finger, CCCH-type
SMARTSM0035614298321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MNNLTLETDN TFASLLELAA NNDVEGFKRS IERDLAGIDE IGLWYGRKKG SKHMVLEHRT  60
PLMVASTYGS IDVVKLILSV SNSDINRTCG LDKTTALHCA ASGGSINALD VVKVLLEAGA  120
DPNLVDANGH CPFDVIVVSP KFQDSKFSLE KLLATNGSNS NSNSPPLSPS PENRSLSSGS  180
DSTSSPHSPK FNEISVTSAL EKKEYPIDPS LPDIKNSIYS TDEFRMFSFK VRPCSRAYSH  240
DWTECPFVHP GENARRRDPR KYHYSCVPCP DFRKGACRRG DMCEYAHGVF ECWLHPAQYR  300
TRLCKDGTNC NRRVCFFAHT PEELRPLYVS TGSAVPSPRS GSTAMDFAAV MSLLPGSPSS  360
ISVMSPSPLT PPMSPSAHGI SSNMGWPQPN VPALHLPGSN LQSSRLRSSL NARDIAAEDL  420
DMFSDFDLQQ KQLLNELSRL SRNRSAHSKT LTTPSNLEDL FSSESSSPRY SPNHKSAYLN  480
QFQQQQIIGS QSPMNANFSP KTMDQPLLQA SFGVPSMSPR GMDPISPMSS RVSLLSQHQQ  540
QQFRSLSSRD LGSNSSAIGG DPSWAKWGSS NGKPDWSVNA EEFGKLERSS SFELGNNGEE  600
PDLSWVQSLV KESPQETKEK SEAGTLGSVG SSGEGSNLNS SQIEPIDQSV LSAWLEQMQL  660
DQLMAQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028092752.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_028092753.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2R6QV800.0A0A2R6QV80_ACTCH; Zinc finger CCCH domain-containing protein
STRINGXP_006493920.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]