PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn147371
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 474aa    MW: 52261.2 Da    PI: 8.9068
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn147371genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05628123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ C+k F r  nL+ H r H
  Achn147371  6 FICEVCNKGFQREQNLQLHRRGH 28
                89*******************88 PP
2zf-C2H214.20.0001382104123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ykC++C+k +  +s+ k H +t+
  Achn147371  82 YKCEKCSKKYAVQSDWKAHSKTC 104
                 9******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.7E-8528No hitNo description
Gene3DG3DSA:3.30.160.605.1E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.99628IPR007087Zinc finger, C2H2
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PfamPF121712.2E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003551304777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.9E-670103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.7E-877102No hitNo description
SMARTSM003557582102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MATNRFICEV CNKGFQREQN LQLHRRGHNL PWKLKQKTTK EVKRKVYLCP EPTCVHHDPS  60
RALGDLTGIK KHYSRKHGEK KYKCEKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQESARH PSTLSTIGCH LYGASNNTMN LDLTPLGHQI PSIQDQHQPS  180
SDILCLGGTR TEHFDNLISP PIGAAFRPSQ PMPSSTFFMN EPNQIFHEEN QSQHGLHAKK  240
PFHGLIQLNP DHLQNNSGLF NLSSSSFLVP NQFNNGNNIM GNNQITSGVP FVYSASSTVQ  300
NSNVLAPHMS ATALLQKAAQ MGSTTSNTSA SLIRGFGSST SSGNKTDKPQ ISANLGGVFG  360
DNNENNLQDL MNSLAGGGSS NIFGGFNEQD NTYRRGLFNA NRPNLEQTQT QPNLHHNIGW  420
SDHNNHSMTR DFLGVGEIVR SMSSGGGIDH MSSLDSERKT APKSQAFVDG NFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3478142367Zinc finger protein JACKDAW
5b3h_F3e-3478142367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028094501.10.0LOW QUALITY PROTEIN: protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A2R6PHA60.0A0A2R6PHA6_ACTCH; Protein indeterminate-domain 5 like
STRINGVIT_01s0010g02100.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.23e-97indeterminate(ID)-domain 4