PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn147221
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family M-type_MADS
Protein Properties Length: 497aa    MW: 51213.5 Da    PI: 8.2079
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn147221genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.61.6e-231663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                + en+sn qvtfskRr g++KKA+ELS+LC+aev++i+fs+ +k + +
  Achn147221 16 KMENESNLQVTFSKRRSGLFKKASELSILCGAEVCIIVFSPGNKAFSF 63
                679**************************************9987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-32766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.978767IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-27877IPR002100Transcription factor, MADS-box
CDDcd002659.01E-35881No hitNo description
PRINTSPR004044.5E-19929IPR002100Transcription factor, MADS-box
PfamPF003193.1E-251663IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-192944IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-194465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MAEKKTRGRQ RVAMEKMENE SNLQVTFSKR RSGLFKKASE LSILCGAEVC IIVFSPGNKA  60
FSFGHPSVDA VIDRFLTGNQ APPNATNQLV EAHRNVAVQD LNVRLMQVQE TLEAERKRGA  120
ELDQERAVSR SQRPWEAPID ELGLEQLEQL KAAMENLRDN VALHVEKLIQ EEQQAAEEEE  180
NPSAGGDSGL PLMAGFSSAS GAPSQFQAGP SSAGGFGSSS AFTFQAGPSS FAGVGSPDVG  240
SFAHLPGPSS LRATTGSSEG TGRGEGSRSG GTGGSPFYGG PSSFVAGTSS GTSGPLLYQP  300
RPSFYVGTSS SGPSAYQPGP STFVVGSSSD TATFPYHGGP SSFVFGTINT AAMGYPTVQS  360
SLVGSSFSGG THSTAALPYP ARPSFFVGGT GTGTGTDTSA TVLRPGSFSG NWVSPYQAGP  420
SSNIVGPRTY ANVVAFPPFP AGPSSFQGRA SFPPPTVPRG AVPSGGPGAP PDPRAPWPRG  480
SSEPRGPSRG RGRGYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A5e-15892186Myocyte-specific enhancer factor 2A
3kov_B5e-15892186Myocyte-specific enhancer factor 2A
3kov_I5e-15892186Myocyte-specific enhancer factor 2A
3kov_J5e-15892186Myocyte-specific enhancer factor 2A
3p57_A5e-15892186Myocyte-specific enhancer factor 2A
3p57_B5e-15892186Myocyte-specific enhancer factor 2A
3p57_C5e-15892186Myocyte-specific enhancer factor 2A
3p57_D5e-15892186Myocyte-specific enhancer factor 2A
3p57_I5e-15892186Myocyte-specific enhancer factor 2A
3p57_J5e-15892186Myocyte-specific enhancer factor 2A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6PAC91e-133A0A2R6PAC9_ACTCH; Agamous-like MADS-box protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-57AGAMOUS-like 62