PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn146511
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 328aa    MW: 37094.5 Da    PI: 7.5855
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn146511genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.5e-54111421128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL+ k ++ + +e+ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++ + 
  Achn146511  11 VPPGFRFHPTDEELLYYYLRKKVSCEAIDL-DVIREVDLNKLEPWDLKdKcRIGSgSENEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIHLSs 108
                 69****************************.9***************843444443677*************************************997 PP

         NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++ +g++ktLvfy+grap+g+ktdW+mheyrl
  Achn146511 109 gNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRL 142
                 77888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-598166IPR003441NAC domain
PROSITE profilePS5100558.5411166IPR003441NAC domain
PfamPF023653.8E-2812142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAAGGNGKLC VPPGFRFHPT DEELLYYYLR KKVSCEAIDL DVIREVDLNK LEPWDLKDKC  60
RIGSGSENEW YFFSHKDKKY PTGTRTNRAT TAGFWKATGR DKAIHLSSGN SKRIGMRKTL  120
VFYTGRAPHG QKTDWIMHEY RLDDDDDNAQ LQVQEDGWVI CRAFKKKSHN MGGGDSGDFH  180
PEFGQQQHYF TDHRHMKASG SSSTPRILDE PLPKQKAFEE CNFDGGSNMH LPQLLSHESF  240
LSPISFNTME IECSQNLLRL TSRSGTSCGA VQQQDWTLLD RLLANSRQNH PVASPSTQAL  300
DQAGSAQRFG FPFQYLGCET DILRFSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-50816814167NO APICAL MERISTEM PROTEIN
1ut4_B3e-50816814167NO APICAL MERISTEM PROTEIN
1ut7_A3e-50816814167NO APICAL MERISTEM PROTEIN
1ut7_B3e-50816814167NO APICAL MERISTEM PROTEIN
3swm_A3e-50816817170NAC domain-containing protein 19
3swm_B3e-50816817170NAC domain-containing protein 19
3swm_C3e-50816817170NAC domain-containing protein 19
3swm_D3e-50816817170NAC domain-containing protein 19
3swp_A3e-50816817170NAC domain-containing protein 19
3swp_B3e-50816817170NAC domain-containing protein 19
3swp_C3e-50816817170NAC domain-containing protein 19
3swp_D3e-50816817170NAC domain-containing protein 19
4dul_A3e-50816814167NAC domain-containing protein 19
4dul_B3e-50816814167NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164168KKKSH
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:19081078, ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028115513.11e-150protein SOMBRERO isoform X1
RefseqXP_028115519.11e-150protein SOMBRERO isoform X1
SwissprotQ9MA171e-107SMB_ARATH; Protein SOMBRERO
TrEMBLA0A2R6QT380.0A0A2R6QT38_ACTCH; Protein SOMBRERO like
STRINGVIT_19s0085g01210.t011e-149(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.34e-99NAC family protein
Publications ? help Back to Top
  1. Fendrych M, et al.
    Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis.
    Curr. Biol., 2014. 24(9): p. 931-40
    [PMID:24726156]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Karve R,Suárez-Román F,Iyer-Pascuzzi AS
    The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release.
    Plant Physiol., 2016. 171(3): p. 2101-11
    [PMID:27221617]
  4. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]