PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn145481 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 263aa MW: 27904.2 Da PI: 4.4731 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18 | 8e-06 | 149 | 170 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cg F+++++L H++ H Achn145481 149 QCPVCGSFFPSNHSLSGHMKIH 170 8*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50030 | 11.944 | 36 | 81 | IPR015940 | Ubiquitin-associated domain |
SuperFamily | SSF46934 | 2.55E-14 | 38 | 80 | IPR009060 | UBA-like |
Gene3D | G3DSA:1.10.8.10 | 5.6E-21 | 38 | 80 | No hit | No description |
CDD | cd14399 | 1.24E-18 | 42 | 80 | No hit | No description |
Pfam | PF00627 | 6.8E-9 | 42 | 76 | IPR015940 | Ubiquitin-associated domain |
SMART | SM00165 | 2.4E-6 | 42 | 80 | IPR015940 | Ubiquitin-associated domain |
SuperFamily | SSF57667 | 4.98E-5 | 146 | 172 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.4E-4 | 147 | 170 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.764 | 148 | 170 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0021 | 148 | 170 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 150 | 170 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 263 aa Download sequence Send to blast |
MTTRLQLKTI VEQLVKQILT LQRTLLSQIG QHPSTSAPEE LYATQLSQLQ EMGFFDTREN 60 IRALIATAGN VHAAVEQLLG EPCEATVGES FNGGGGGGEN VVVSAGLALL AIGGNGDSVE 120 AAVGEGSSVV HGKRTRDGRG PPLEGQPLQC PVCGSFFPSN HSLSGHMKIH PDRAWQGIHP 180 YPVFSRDEFG DILRQAEEEV LAVVVVNEAD TGGEKEEEKV VVATVAEGRE EVAAEKAGDG 240 VDLKEEPPRK LLDLNRTPSP DE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26940.1 | 1e-08 | C2H2 family protein |