PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn145481
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 263aa    MW: 27904.2 Da    PI: 4.4731
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn145481genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188e-06149170223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 +Cp Cg  F+++++L  H++ H
  Achn145481 149 QCPVCGSFFPSNHSLSGHMKIH 170
                 8*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5003011.9443681IPR015940Ubiquitin-associated domain
SuperFamilySSF469342.55E-143880IPR009060UBA-like
Gene3DG3DSA:1.10.8.105.6E-213880No hitNo description
CDDcd143991.24E-184280No hitNo description
PfamPF006276.8E-94276IPR015940Ubiquitin-associated domain
SMARTSM001652.4E-64280IPR015940Ubiquitin-associated domain
SuperFamilySSF576674.98E-5146172No hitNo description
Gene3DG3DSA:3.30.160.603.4E-4147170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.764148170IPR007087Zinc finger, C2H2
SMARTSM003550.0021148170IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280150170IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MTTRLQLKTI VEQLVKQILT LQRTLLSQIG QHPSTSAPEE LYATQLSQLQ EMGFFDTREN  60
IRALIATAGN VHAAVEQLLG EPCEATVGES FNGGGGGGEN VVVSAGLALL AIGGNGDSVE  120
AAVGEGSSVV HGKRTRDGRG PPLEGQPLQC PVCGSFFPSN HSLSGHMKIH PDRAWQGIHP  180
YPVFSRDEFG DILRQAEEEV LAVVVVNEAD TGGEKEEEKV VVATVAEGRE EVAAEKAGDG  240
VDLKEEPPRK LLDLNRTPSP DE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.11e-08C2H2 family protein