PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn144931
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 516aa    MW: 56539.4 Da    PI: 7.3327
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn144931genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.26.2e-32231286359
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  gynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  +++v ei+Y+g+Hnh+
  Achn144931 231 EGYNWRKYGQKQVKGSEFPRSYYKCTHPKCPVKKKVERSL-EGQVSEIIYKGQHNHQ 286
                 69**************************************.***************8 PP
2WRKY105.43e-33402460159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++pr+YY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Achn144931 402 LDDGYRWRKYGQKVVKGNPYPRGYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 460
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-27224288IPR003657WRKY domain
SuperFamilySSF1182901.57E-24227288IPR003657WRKY domain
SMARTSM007744.1E-33229287IPR003657WRKY domain
PROSITE profilePS5081121.85231288IPR003657WRKY domain
PfamPF031069.2E-24232286IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-37387462IPR003657WRKY domain
SuperFamilySSF1182901.31E-29394462IPR003657WRKY domain
PROSITE profilePS5081139.238397462IPR003657WRKY domain
SMARTSM007741.6E-39402461IPR003657WRKY domain
PfamPF031066.7E-26403460IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MAEKESTASS AHLRPTITLP PRTSMESLFT GGPGASPGPM TLVSNFFSED EPDSEFRSFS  60
QLLAGAMASP AAVPGHRASF PEDYKDKESG VGENDFRFKQ NRPAGLMVAQ PQMFAVPPGL  120
SPTTLLESSG WFSPGQGPFG MSHQQALAQV TAQAAQAQSQ MHNPTEFPSM FSEAPAASMP  180
QPPSFTSNTT THQQMPPSMP EPSIMTESSD LSHSDHRSRP SSFIADKPAG EGYNWRKYGQ  240
KQVKGSEFPR SYYKCTHPKC PVKKKVERSL EGQVSEIIYK GQHNHQPPQP SKRAKDTGNP  300
NRNLNHHGNS DMSVEGQTWN SDKLREVGPA NSMSMKDQES SLVSSDSEEV GDTETGVDER  360
DEHEPEAKRR NTEVRVSEPA SSNRGVTEPR IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP  420
YPRGYYKCTS QGCNVRKHVE RAASDPKAVI TTYEGKHNHD VPAARNSSHN TTTNNLSQSV  480
PNNAVPNKHT SVRNIVLGNN GSQSRALLQF KEEST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-41231463878Probable WRKY transcription factor 4
2lex_A2e-41231463878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028111113.10.0probable WRKY transcription factor 3 isoform X1
RefseqXP_028111114.10.0probable WRKY transcription factor 3 isoform X1
SwissprotQ9XI901e-171WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2R6QQT90.0A0A2R6QQT9_ACTCH; WRKY transcription factor
STRINGXP_009794188.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-151WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]