PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn144711

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Dof

Protein Properties

Length: 449aa MW: 49167.9 Da PI: 8.1302

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn144711	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.4e-39	123	183	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+st+tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ss Achn144711 123 PDKILPCPRCNSTDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGSGRRKNKSSS 183 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-29	120	180	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-32	125	181	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.947	127	181	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	129	165	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MKDPAIKLFG KTIPLLPKHH LSNLTTATTT RVAVDHEQQL SSTCSSPAEK NCNRVGDSQE 60 NGKKPSESEL TETRPEDELK DPKTPCGNPE TPSVEKEPSS PEPSKNEEQS ETSASEEKTM 120 KKPDKILPCP RCNSTDTKFC YYNNYNVNQP RHFCKNCQRY WTAGGTIRNV PVGSGRRKNK 180 SSSALHYRQI VASECLEAAR GNSINGIYRP ANGTVLSFAS DPSICESMAS AWSLAEKKKI 240 SVSCGGKKNE DDHKSRFSVS DSPGNEGYCS LQESVMANFQ TLPPQVPCFP GPPWPFPMVP 300 PAFSPSGFPI TFYPTPAYWG CTPPGSWGCT LPNPAVFPIP RSPTLGKHSR DGNIHKPSKS 360 DSEEPCKENN SERGVWVPKT LRIDDPARSS IWSTLGINNE KNDFINGGSL FKAFQSKGDE 420 KKHVEETSLA LQANPAALAR SSNFQERA*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MKDPAIKLFG KTIPLLPKHH LSNLTTATTT RVAVDHEQQL SSTCSSPAEK NCNRVGDSQE  60
NGKKPSESEL TETRPEDELK DPKTPCGNPE TPSVEKEPSS PEPSKNEEQS ETSASEEKTM  120
KKPDKILPCP RCNSTDTKFC YYNNYNVNQP RHFCKNCQRY WTAGGTIRNV PVGSGRRKNK  180
SSSALHYRQI VASECLEAAR GNSINGIYRP ANGTVLSFAS DPSICESMAS AWSLAEKKKI  240
SVSCGGKKNE DDHKSRFSVS DSPGNEGYCS LQESVMANFQ TLPPQVPCFP GPPWPFPMVP  300
PAFSPSGFPI TFYPTPAYWG CTPPGSWGCT LPNPAVFPIP RSPTLGKHSR DGNIHKPSKS  360
DSEEPCKENN SERGVWVPKT LRIDDPARSS IWSTLGINNE KNDFINGGSL FKAFQSKGDE  420
KKHVEETSLA LQANPAALAR SSNFQERA*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028073357.1	0.0	cyclic dof factor 1-like
TrEMBL	A0A2R6QQW3	0.0	A0A2R6QQW3_ACTCH; Cyclic dof factor like
STRING	VIT_14s0108g00980.t01	1e-159	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-82	cycling DOF factor 2