PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn144601
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Whirly
Protein Properties Length: 341aa    MW: 38255.4 Da    PI: 10.1609
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn144601genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly131.35.1e-411082161108
      Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk.veP 98 
                 s+yk+ + l+++++ p+f+ +dsg++kl+r+G+++l++a+a ++r+ydW++kq+f+ls+ e+++l++l+++esceffhdp+ ++s+eGkvrk lk + P
  Achn144601 108 SIYKGNGVLSMEPRSPEFSLIDSGAFKLSREGFVVLQFAPASGVRHYDWDRKQVFSLSVSEMGTLIKLGARESCEFFHDPSIGKSDEGKVRKLLKfIVP 206
                 79********************************************************************************************94567 PP

      Whirly  99 lpdGsGlfvn 108
                 +  G  +f n
  Achn144601 207 HLLGWHIFAN 216
                 7666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.109.8E-4496202IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.1E-43101237IPR009044ssDNA-binding transcriptional regulator
PfamPF085362.1E-37109203IPR013742Plant transcription factor
SuperFamilySSF544951.04E-18248338IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene3DG3DSA:3.10.110.101.2E-13254297IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene3DG3DSA:3.10.110.101.3E-11299335IPR016135Ubiquitin-conjugating enzyme/RWD-like
PROSITE profilePS501279.012299327IPR000608Ubiquitin-conjugating enzyme E2
PfamPF001793.9E-5299332IPR000608Ubiquitin-conjugating enzyme E2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MRERDAWVSL GGGEIESSFE EEDIGEGLGI QNPNRWSIIH SPSSLNAFTA TPLNPKTSSL  60
STTNPPHRTL SVKCRHSNNF EQQQRFAPKL PPENKGKSMP PRVFVRHSIY KGNGVLSMEP  120
RSPEFSLIDS GAFKLSREGF VVLQFAPASG VRHYDWDRKQ VFSLSVSEMG TLIKLGARES  180
CEFFHDPSIG KSDEGKVRKL LKFIVPHLLG WHIFANSIKF EDALRVNHAN PRSGTDLNGA  240
GKLRDLHVRL NLVVRMSTPA RKRLMRDFKR LQQDPPAGIS GAPQDNNIML WNAVIFGLSL  300
LCDPNPNSPA NSEAARMFSE NKREYNRRVR EIVEQSWTAD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1l3a_A4e-5810123736216p24: plant transcriptional regulator PBF-2
1l3a_B4e-5810123736216p24: plant transcriptional regulator PBF-2
1l3a_C4e-5810123736216p24: plant transcriptional regulator PBF-2
1l3a_D4e-5810123736216p24: plant transcriptional regulator PBF-2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9709237e-32JF970923.1 Nelumbo nucifera ubiqutin-conjugating enzyme 2 mRNA, complete cds.
GenBankJF9709247e-32JF970924.1 Nelumbo nucifera ubiqutin-conjugating enzyme 3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028085682.11e-82single-stranded DNA-binding protein WHY1, chloroplastic-like
SwissprotQ9LL853e-66WHY1_SOLTU; Single-stranded DNA-binding protein WHY1, chloroplastic
TrEMBLA0A2R6QQY71e-147A0A2R6QQY7_ACTCH; Single-stranded DNA-binding protein
STRINGcassava4.1_013407m5e-71(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77312430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-63ssDNA-binding transcriptional regulator