PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn144171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 217aa MW: 24032.8 Da PI: 9.0055 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 84 | 106 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k F ++ L H++ H Achn144171 84 FVCPYCFKEFGNSQALGGHQNAH 106 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.2E-5 | 79 | 110 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.47E-6 | 80 | 111 | No hit | No description |
PROSITE profile | PS50157 | 10.824 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MKKDVSNLLS LTGDGDTEQP SKSCAEKKLR LFGFELDPNK NHQTSLKVSV EGDESANSST 60 SVSSGKEKSL KEKRSINEPG KKKFVCPYCF KEFGNSQALG GHQNAHKKER MKKKRLQIQA 120 RKASINHYLQ PFHQNSHSFS YFYDPFCYAS DFSQNVSQIS FGGDDHDAHL GGCQPPNWHD 180 VPVNVAAFQP DTCGFILTRG DRSGESQPVV FKPGSK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003631292.2 | 9e-74 | PREDICTED: zinc finger protein 5 isoform X2 | ||||
Refseq | XP_007044496.1 | 5e-74 | PREDICTED: zinc finger protein 5 | ||||
TrEMBL | A0A2R6P3M3 | 1e-122 | A0A2R6P3M3_ACTCH; Zinc finger protein | ||||
STRING | VIT_01s0026g00850.t01 | 2e-73 | (Vitis vinifera) | ||||
STRING | EOY00328 | 2e-73 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5136 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10480.1 | 3e-15 | zinc finger protein 5 |