PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn139261 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 226aa MW: 26154.8 Da PI: 5.0446 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 41.9 | 3.3e-13 | 2 | 63 | 29 | 90 |
FAR1 29 tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++ +fvC keg+re++k++ +++++ rt+C+ + ++ ++ ++kw+++k++ +HnH+l+ Achn139261 2 INCKFVCGKEGEREKDKRH-PLVKQRQEDMRTNCDVFMYISFKReSSKWVMKKFKDNHNHPLN 63 5679***********9999.888889999************9988****************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.9E-10 | 2 | 63 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence Send to blast |
MINCKFVCGK EGEREKDKRH PLVKQRQEDM RTNCDVFMYI SFKRESSKWV MKKFKDNHNH 60 PLNLPQFIHR MPSQRKLCEV QEMNVDQADD TDMSLKASDD LVIALAGRRE FVGVTQEDQK 120 RYLLQLDIDE MITNIFWADY QMITDYGYFG DVLFDTTFLT DEKMVKLAGR SSECEAAYQL 180 VDETITDLCG NVDNMLLLFA QECSCASGSG SHIELENRRI RCGRS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028056795.1 | 5e-66 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_028124367.1 | 6e-66 | protein FAR1-RELATED SEQUENCE 5-like |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3021 | 17 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-14 | FAR1-related sequence 5 |