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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Achn139261 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 226aa MW: 26154.8 Da PI: 5.0446 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 41.9 | 3.3e-13 | 2 | 63 | 29 | 90 |
FAR1 29 tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
++ +fvC keg+re++k++ +++++ rt+C+ + ++ ++ ++kw+++k++ +HnH+l+
Achn139261 2 INCKFVCGKEGEREKDKRH-PLVKQRQEDMRTNCDVFMYISFKReSSKWVMKKFKDNHNHPLN 63
5679***********9999.888889999************9988****************95 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 5.9E-10 | 2 | 63 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 226 aa Download sequence Send to blast |
MINCKFVCGK EGEREKDKRH PLVKQRQEDM RTNCDVFMYI SFKRESSKWV MKKFKDNHNH 60 PLNLPQFIHR MPSQRKLCEV QEMNVDQADD TDMSLKASDD LVIALAGRRE FVGVTQEDQK 120 RYLLQLDIDE MITNIFWADY QMITDYGYFG DVLFDTTFLT DEKMVKLAGR SSECEAAYQL 180 VDETITDLCG NVDNMLLLFA QECSCASGSG SHIELENRRI RCGRS* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_028056795.1 | 5e-66 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Refseq | XP_028124367.1 | 6e-66 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA3021 | 17 | 40 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 2e-14 | FAR1-related sequence 5 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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