PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn138051
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family SBP
Protein Properties Length: 448aa    MW: 49007.5 Da    PI: 8.2353
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn138051genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP98.94.5e-3192160277
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 Cqv gC++dls++k+yh+rhkvCevhsk+++v+v+g+eqr       fh l efD++krsCr+rLa+hn+rrrk++
  Achn138051  92 CQVYGCKKDLSSCKDYHKRHKVCEVHSKTAKVVVNGIEQR-------FHLLGEFDDGKRSCRKRLAGHNARRRKPH 160
                 **************************************97.......7**************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-2486146IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.01789159IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-3090162IPR004333Transcription factor, SBP-box
PfamPF031101.2E-2092158IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MMGKSWPGKN LVKDCFSSKV SEKISIPMAS TTNAFSAEED FSSSVVESNC RDSSLVDLNL  60
GRIADHRDGQ DLSSSAPVKR VRGDLSSKTP FCQVYGCKKD LSSCKDYHKR HKVCEVHSKT  120
AKVVVNGIEQ RFHLLGEFDD GKRSCRKRLA GHNARRRKPH VGIHSGRIGR LLQSYNGSRF  180
GGNTLTASSF LCQDILPSTL LPPQTHYTNG WSGCIKLENG VDYRSQSAIP IAHGDPHPKS  240
LFHHDFGKHC PPFHTNGVNS ATGRDFNVIS EYPHDMDTRD SLSRSLVQTI GSEDFNLFDS  300
ASTVQGQSGM STPGCALSLL SSQSQNSSSH SSGIPMAQPL YVSGSHPRDS VSQVSGKLLG  360
ASQSHKFNSS RINFVEENQF GSILISDDGE AVNFTDGIFR GSQYMDARDS LSSEDGPTID  420
LLQLSSQLQR VEHQRQSMQA KQKNDSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-2086158584squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028092789.11e-168teosinte glume architecture 1-like isoform X2
TrEMBLA0A2R6PRP20.0A0A2R6PRP2_ACTCH; Squamosa promoter-binding-like protein
STRINGEOY221291e-158(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51871639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.14e-39SBP family protein