PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn131591
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 313aa    MW: 35451 Da    PI: 7.2206
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn131591genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.5e-35251172103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++ ++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  e+         weF+++ Fkkg+k+ll++i+
    Achn131591  25 FLTKTYQLVDDPTTNYIVSWGEDEATFVVWRPPEFARDLLPSYFKHNNFSSFVRQLNTYGFRKIVPER---------WEFANQFFKKGEKHLLCEIH 112
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    Achn131591 113 RRKTS 117
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-3616109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5521114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.17E-3222114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.8E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALILDNCET ILFPSDSHKS VPAPFLTKTY QLVDDPTTNY IVSWGEDEAT FVVWRPPEFA  60
RDLLPSYFKH NNFSSFVRQL NTYGFRKIVP ERWEFANQFF KKGEKHLLCE IHRRKTSQPL  120
QMSINHHHPL PHSQIGGGPG FFPYLTQASV SPPNSDDQAA NWCDYSPLHA VTGGFYDGSV  180
ATALSEDNDR LRRSNNMLMS EITHMRKLYN DIIYFVQNHV KPVGPSNTLS LNTSQKAMNH  240
LIGYNQTGPE QGVVEEGGES HNILRTKLFG VNLQAKKRLH SEYSSSILET NKARLMLERD  300
DLGLNLMPPS PC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A8e-222011716123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028073018.11e-151LOW QUALITY PROTEIN: heat stress transcription factor B-4-like
SwissprotQ9C6351e-108HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2R6R3D80.0A0A2R6R3D8_ACTCH; Heat stress transcription factor B-4 like
STRINGVIT_18s0001g10380.t011e-144(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-107heat shock transcription factor B4