PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn129751

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NF-YB

Protein Properties

Length: 193aa MW: 22163.3 Da PI: 5.1992

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn129751	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	166.3	3.8e-52	60	154	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 eq+r+lPianv+rimk++lP nak+sk+aket+qecvsefisfvt+easd+c++ekrkt+ngdd++wal++lGf+dy++plk yl++yreleg++ Achn129751 60 EQERLLPIANVGRIMKQILPPNAKLSKEAKETMQECVSEFISFVTGEASDRCHKEKRKTVNGDDICWALGSLGFDDYAKPLKRYLERYRELEGAR 154 89******************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	7.2E-52	57	170	IPR009072	Histone-fold
SuperFamily	SSF47113	2.33E-39	61	168	IPR009072	Histone-fold
Pfam	PF00808	4.6E-27	64	128	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	9.7E-19	92	110	No hit	No description
PROSITE pattern	PS00685	0	95	111	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	9.7E-19	111	129	No hit	No description
PRINTS	PR00615	9.7E-19	130	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MVLLQCDLEC LIGKRMFGEQ HVRVKQDQTI SSFFLLFVEM VDNIGSNSDI FEEDGVIIME 60 QERLLPIANV GRIMKQILPP NAKLSKEAKE TMQECVSEFI SFVTGEASDR CHKEKRKTVN 120 GDDICWALGS LGFDDYAKPL KRYLERYREL EGARSNNQNR ATNSNEERDM EPRIPIKFGV 180 IEESNKSFSR RF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	5e-41	60	149	3	92	Transcription factor HapC (Eurofung)
4g92_B	5e-41	60	149	3	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021820118.1	9e-73	nuclear transcription factor Y subunit B-5
Refseq	XP_023891930.1	1e-72	nuclear transcription factor Y subunit B-4-like
Swissprot	O82248	4e-58	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2R6QU59	1e-109	A0A2R6QU59_ACTCH; Nuclear transcription factor Y subunit B-5 like
STRING	VIT_07s0104g01640.t01	5e-72	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	2e-60	nuclear factor Y, subunit B5

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]