PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn128581
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 254aa    MW: 28324.3 Da    PI: 8.4893
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn128581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.13.8e-3260117260
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                  +++ Y+eClkNhAas+Gg+a+DGCgEfmps geegt +al C+AC+CHRnFHR+e e e
   Achn128581  60 KRIFYRECLKNHAASMGGNALDGCGEFMPS-GEEGTLEALLCSACNCHRNFHRKELEGE 117
                  5789*************************9.999********************98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2362117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.0E-2962114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.2E-3164113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152328.13964113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.41E-19173242IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-31176243IPR009057Homeodomain-like
TIGRFAMsTIGR015651.7E-28181237IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MELSSQEVGE IPIPINTSYG HPMIHNHIIP TTISNGPTSV PTTTTAQEAQ AQAQIMPYKK  60
RIFYRECLKN HAASMGGNAL DGCGEFMPSG EEGTLEALLC SACNCHRNFH RKELEGEQNY  120
NCDQFFQRVG RKVILGHPSN ILAGPKAFQA QHMVLPYNVG PMGSESDELD GGGPPPQVVV  180
KKRARTKFTQ EQKEKMLGFA ERVGWKMQKQ EESEVQQFCQ EIGIKRRVLK VWMHNNKHNL  240
AKKNISNSPQ NPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A6e-231802391675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021617744.11e-103zinc-finger homeodomain protein 4-like
SwissprotO647226e-71ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLA0A2R6Q1R20.0A0A2R6Q1R2_ACTCH; Zinc-finger homeodomain protein
STRINGcassava4.1_013112m1e-103(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-72homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]