PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn127411
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 515aa    MW: 56075.3 Da    PI: 4.9886
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn127411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.38.5e-16308354455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Achn127411 308 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 354
                 6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.11E-20302370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.57E-17307358No hitNo description
Gene3DG3DSA:4.10.280.107.0E-21308365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-13308354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MNHCVPDFEL DEDYAIPTSS GLSRPKKSPM HEEEIMDLLW QNGQVVMQSQ NQRSMRRSQI  60
GDDVLPPEQS AAREFRPEEE SGTQLFMQED EMASWLHYPI DDDSFERDLY ADLIYPAPCA  120
PAAPIPEVRT PEVRIPIPNA TAAVASRPPI PPTRNFLHFS RPKGKMEPGP SSSNKAVRET  180
TVVDSSETPA LESRASHATA QVSAENGGFC AVSCGGAAAV TSSAAGGGGR ETGMCELTVT  240
SSSGGSGASL SANAEAVYKP MATEDRKRKG GEADDTECQS EDVEFESPDA KKQVRGSTST  300
KRSRAAEVHN LSERRRRDRI NEKMRALQEL IPRCNKSDKA SMLDEAIEYL KSLQLQVQMM  360
SMGCSMVPMM FPGVQQYMPP MGVGMGMAMC MEMGLSRPMM PFPSVLAGSA LQTQAAAAHM  420
GPPFPMQAFH MSPVPLPDPS RPQATGQSDL MLNSMGIQNP NQPRMPNFAD PYQQYLGLHQ  480
MQLPLPQNQA MMQPSTSKPS SSRDVETREN PQSG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312317ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065178.10.0transcription factor PIF1-like isoform X2
TrEMBLA0A2R6PQ620.0A0A2R6PQ62_ACTCH; Transcription factor like
STRINGXP_009591396.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.33e-69phytochrome interacting factor 3-like 5