PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn125991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 983aa MW: 109521 Da PI: 5.1923 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.4 | 3.5e-10 | 266 | 306 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Achn125991 266 RKRREKINERLRILQNLVPNG-----TKVDISTMLEEAVDYVKFLQ 306 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.339 | 256 | 305 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-14 | 258 | 325 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.4E-12 | 261 | 315 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-11 | 262 | 311 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.31E-11 | 265 | 310 | No hit | No description |
Pfam | PF00010 | 1.9E-7 | 266 | 306 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00546 | 8.2E-10 | 672 | 714 | IPR003892 | Ubiquitin system component Cue |
PROSITE profile | PS51140 | 15.396 | 672 | 715 | IPR003892 | Ubiquitin system component Cue |
SuperFamily | SSF46934 | 4.59E-17 | 673 | 727 | IPR009060 | UBA-like |
Pfam | PF02845 | 1.4E-9 | 674 | 714 | IPR003892 | Ubiquitin system component Cue |
CDD | cd14364 | 2.56E-16 | 674 | 713 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 983 aa Download sequence Send to blast |
MEPVGAFLDE EWESLSRFFS SDEGDFMAYF QGQNIFCPID HEATNMNMTP IDESLPLSYA 60 TFTNLEYFSQ ESSNNSHTDT AFFSNSSPEN HYFRGSNHFQ ASNNNSESME FHAMDNANNL 120 SIPISPDSIM EDIVCLKEEK KTEKLENSDD PPATVNLGKE HQLKRKNDSI SETPKKKPRV 180 LRNAQKGKKN EKNKKNQMLS LKNNDDEEEE TNNGGITNGQ SSSCCSSEND SNASHEELNG 240 GEISEFKGKT RASRGAATDP QSLYARKRRE KINERLRILQ NLVPNGTKVD ISTMLEEAVD 300 YVKFLQLQIK LLSSDDLWMS RWYDFPYRGV KGIVAGIIVG EFELSRRVFM ALYRISSNRD 360 PGARAADSLS PKDHAVLLQE KKLLDMPKLL DICAIYGHEN EDLTRSLVVN ALKAQPGIHD 420 NFTAALSHFL KIVHTMHQRC SASLEVMDFI NDAIVSMDAF VGAYKPAAVF FACPVEMSFG 480 NEDLLSTLVR LHDSLLPSLH RGFRIIFNAG EDRLQGTCVD MLSKVTLSLK MLSTRIVNFG 540 WKLLDVCYLS FEVFETNFPL PAVTKMFPAN VEDPVIRGDI LVQTFREISE GYSHVQDSQS 600 RGTFFQNIEK NHKVMERIEF LQSTVWILME DEQFQYLSGI TKHPSGTNTK EIPCVPISQT 660 STDMQVGEDA AIVESKISQI KDLFPDYGKG FLSACLEVYN QNPEEVIQRI LEGTLHKDLQ 720 SLDTSLDGIP PPKSASMGRD DKGKGKLFES VPPPSTNAAP PTIREQQTKG SSSSSSSSVG 780 RFVRKSTLNS PDSNTLDSQD EKNLAKTAAL ILQLEYEDEY DDSFDDLGFN VADSGVEENE 840 TLGEKMNSNR GKPWERETGS SAPSDSSKWN SRKKPQFYVK DGKNYSYKVA DSVAVANINE 900 AAIVNQAQRE LIHGLGRGGN LPLGAVKKLM ESNEEGEDES DVTEGGGGRG NRGRGRGRRG 960 GGRNNYRKDQ AMKKHFAGVT GH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 270 | RKRREK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028053545.1 | 0.0 | activating signal cointegrator 1 complex subunit 2 | ||||
TrEMBL | A0A2R6QY38 | 0.0 | A0A2R6QY38_ACTCH; Activating signal cointegrator 1 complex subunit like | ||||
STRING | VIT_18s0001g09180.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33880.1 | 5e-40 | ROOT HAIR DEFECTIVE 6-LIKE 2 |