PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn125991

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 983aa MW: 109521 Da PI: 5.1923

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn125991	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.5e-10	266	306	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Achn125991 266 RKRREKINERLRILQNLVPNG-----TKVDISTMLEEAVDYVKFLQ 306 9****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.339	256	305	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-14	258	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-12	261	315	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-11	262	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.31E-11	265	310	No hit	No description
Pfam	PF00010	1.9E-7	266	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00546	8.2E-10	672	714	IPR003892	Ubiquitin system component Cue
PROSITE profile	PS51140	15.396	672	715	IPR003892	Ubiquitin system component Cue
SuperFamily	SSF46934	4.59E-17	673	727	IPR009060	UBA-like
Pfam	PF02845	1.4E-9	674	714	IPR003892	Ubiquitin system component Cue
CDD	cd14364	2.56E-16	674	713	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 983 aa Download sequence Send to blast
MEPVGAFLDE EWESLSRFFS SDEGDFMAYF QGQNIFCPID HEATNMNMTP IDESLPLSYA 60 TFTNLEYFSQ ESSNNSHTDT AFFSNSSPEN HYFRGSNHFQ ASNNNSESME FHAMDNANNL 120 SIPISPDSIM EDIVCLKEEK KTEKLENSDD PPATVNLGKE HQLKRKNDSI SETPKKKPRV 180 LRNAQKGKKN EKNKKNQMLS LKNNDDEEEE TNNGGITNGQ SSSCCSSEND SNASHEELNG 240 GEISEFKGKT RASRGAATDP QSLYARKRRE KINERLRILQ NLVPNGTKVD ISTMLEEAVD 300 YVKFLQLQIK LLSSDDLWMS RWYDFPYRGV KGIVAGIIVG EFELSRRVFM ALYRISSNRD 360 PGARAADSLS PKDHAVLLQE KKLLDMPKLL DICAIYGHEN EDLTRSLVVN ALKAQPGIHD 420 NFTAALSHFL KIVHTMHQRC SASLEVMDFI NDAIVSMDAF VGAYKPAAVF FACPVEMSFG 480 NEDLLSTLVR LHDSLLPSLH RGFRIIFNAG EDRLQGTCVD MLSKVTLSLK MLSTRIVNFG 540 WKLLDVCYLS FEVFETNFPL PAVTKMFPAN VEDPVIRGDI LVQTFREISE GYSHVQDSQS 600 RGTFFQNIEK NHKVMERIEF LQSTVWILME DEQFQYLSGI TKHPSGTNTK EIPCVPISQT 660 STDMQVGEDA AIVESKISQI KDLFPDYGKG FLSACLEVYN QNPEEVIQRI LEGTLHKDLQ 720 SLDTSLDGIP PPKSASMGRD DKGKGKLFES VPPPSTNAAP PTIREQQTKG SSSSSSSSVG 780 RFVRKSTLNS PDSNTLDSQD EKNLAKTAAL ILQLEYEDEY DDSFDDLGFN VADSGVEENE 840 TLGEKMNSNR GKPWERETGS SAPSDSSKWN SRKKPQFYVK DGKNYSYKVA DSVAVANINE 900 AAIVNQAQRE LIHGLGRGGN LPLGAVKKLM ESNEEGEDES DVTEGGGGRG NRGRGRGRRG 960 GGRNNYRKDQ AMKKHFAGVT GH*

Sequence ? help Back to Top

Protein Sequence Length: 983 aa Download sequence Send to blast

MEPVGAFLDE EWESLSRFFS SDEGDFMAYF QGQNIFCPID HEATNMNMTP IDESLPLSYA  60
TFTNLEYFSQ ESSNNSHTDT AFFSNSSPEN HYFRGSNHFQ ASNNNSESME FHAMDNANNL  120
SIPISPDSIM EDIVCLKEEK KTEKLENSDD PPATVNLGKE HQLKRKNDSI SETPKKKPRV  180
LRNAQKGKKN EKNKKNQMLS LKNNDDEEEE TNNGGITNGQ SSSCCSSEND SNASHEELNG  240
GEISEFKGKT RASRGAATDP QSLYARKRRE KINERLRILQ NLVPNGTKVD ISTMLEEAVD  300
YVKFLQLQIK LLSSDDLWMS RWYDFPYRGV KGIVAGIIVG EFELSRRVFM ALYRISSNRD  360
PGARAADSLS PKDHAVLLQE KKLLDMPKLL DICAIYGHEN EDLTRSLVVN ALKAQPGIHD  420
NFTAALSHFL KIVHTMHQRC SASLEVMDFI NDAIVSMDAF VGAYKPAAVF FACPVEMSFG  480
NEDLLSTLVR LHDSLLPSLH RGFRIIFNAG EDRLQGTCVD MLSKVTLSLK MLSTRIVNFG  540
WKLLDVCYLS FEVFETNFPL PAVTKMFPAN VEDPVIRGDI LVQTFREISE GYSHVQDSQS  600
RGTFFQNIEK NHKVMERIEF LQSTVWILME DEQFQYLSGI TKHPSGTNTK EIPCVPISQT  660
STDMQVGEDA AIVESKISQI KDLFPDYGKG FLSACLEVYN QNPEEVIQRI LEGTLHKDLQ  720
SLDTSLDGIP PPKSASMGRD DKGKGKLFES VPPPSTNAAP PTIREQQTKG SSSSSSSSVG  780
RFVRKSTLNS PDSNTLDSQD EKNLAKTAAL ILQLEYEDEY DDSFDDLGFN VADSGVEENE  840
TLGEKMNSNR GKPWERETGS SAPSDSSKWN SRKKPQFYVK DGKNYSYKVA DSVAVANINE  900
AAIVNQAQRE LIHGLGRGGN LPLGAVKKLM ESNEEGEDES DVTEGGGGRG NRGRGRGRRG  960
GGRNNYRKDQ AMKKHFAGVT GH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	270	RKRREK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028053545.1	0.0	activating signal cointegrator 1 complex subunit 2
TrEMBL	A0A2R6QY38	0.0	A0A2R6QY38_ACTCH; Activating signal cointegrator 1 complex subunit like
STRING	VIT_18s0001g09180.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	5e-40	ROOT HAIR DEFECTIVE 6-LIKE 2