PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn124741
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 280aa    MW: 31227 Da    PI: 8.1505
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn124741genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-18119173256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ +++k+q  +Lee F++++++  +++  LAk+lgL  rqV vWFqNrRa+ k
  Achn124741 119 RKKLRLSKDQSAVLEESFKEHNTLHPKQKLALAKRLGLRSRQVEVWFQNRRARTK 173
                 788899***********************************************98 PP
2HD-ZIP_I/II125.13.1e-40119208191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+ rqv+vWFqnrRARtk+kq+E+d+++Lkr++++l++en+rL+kev+eLr +l
   Achn124741 119 RKKLRLSKDQSAVLEESFKEHNTLHPKQKLALAKRLGLRSRQVEVWFQNRRARTKLKQTEVDCDFLKRCCENLTDENRRLQKEVQELR-AL 208
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.6E-27194IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.605.0E-1899176IPR009057Homeodomain-like
SuperFamilySSF466891.15E-17108176IPR009057Homeodomain-like
PROSITE profilePS5007116.908115175IPR001356Homeobox domain
SMARTSM003891.8E-14117179IPR001356Homeobox domain
CDDcd000861.78E-14119176No hitNo description
PfamPF000461.4E-15119173IPR001356Homeobox domain
PRINTSPR000312.8E-5146155IPR000047Helix-turn-helix motif
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
PRINTSPR000312.8E-5155171IPR000047Helix-turn-helix motif
CDDcd146860.00575168207No hitNo description
SMARTSM003407.8E-27175218IPR003106Leucine zipper, homeobox-associated
PfamPF021831.4E-11175209IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVEKTDLGLS LSLRFPDHRS SSLHLNLMPS PFNRSKTSWN DNFPFLDRDS ETRSFVKGID  60
VNRLPSAAEG EDDFGVSSPN STISSVSGKK SERDVSGDDN ERACSGGISD PEDGGDASRK  120
KLRLSKDQSA VLEESFKEHN TLHPKQKLAL AKRLGLRSRQ VEVWFQNRRA RTKLKQTEVD  180
CDFLKRCCEN LTDENRRLQK EVQELRALKL SPQFYMQMAP PTTLTMCPSC ESMGPPSSAP  240
SAPPRSHQVD PTITTHHQPS PFYPWAAANA TTPVSHQLF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117123SRKKLRL
2167175RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002263193.11e-128PREDICTED: homeobox-leucine zipper protein HAT4
RefseqXP_023921420.11e-128homeobox-leucine zipper protein HAT4
SwissprotQ054667e-96HAT4_ARATH; Homeobox-leucine zipper protein HAT4
TrEMBLA0A2R6QNQ50.0A0A2R6QNQ5_ACTCH; Homeobox-leucine zipper protein
STRINGVIT_00s0299g00100.t011e-127(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11182485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.15e-95homeobox protein 2
Publications ? help Back to Top
  1. Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
    Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
    Plant Signal Behav, 2014.
    [PMID:23838958]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Francisco M, et al.
    Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
    Front Plant Sci, 2016. 7: p. 1010
    [PMID:27462337]
  4. Müller-Moulé P, et al.
    YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance.
    PeerJ, 2016. 4: p. e2574
    [PMID:27761349]
  5. Ivarson E, et al.
    Effects of Overexpression of WRI1 and Hemoglobin Genes on the Seed Oil Content of Lepidium campestre.
    Front Plant Sci, 2016. 7: p. 2032
    [PMID:28119714]
  6. Kasulin L, et al.
    A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina.
    Mol. Ecol., 2017. 26(13): p. 3389-3404
    [PMID:28316114]
  7. Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
    Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
    Sci Rep, 2017. 7(1): p. 16101
    [PMID:29170398]