PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn124361

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 168aa MW: 19671.1 Da PI: 7.6947

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn124361	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	59.5	1.1e-18	65	136	56	128
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + yfF++r++ ++g ++ra ++ yWk+t +k+++ +++ vg k ++ fy+g +++g++t+W mheyr+ Achn124361 65 IHRYFFTPRETMFPNGVGPKRANSDEYWKQTVPNKHIMY-ENKIVGYKMSFDFYEGGHRNGRRTEWKMHEYRI 136 467**********************************.9999*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	19.416	13	166	IPR003441	NAC domain
Pfam	PF02365	1.9E-10	38	136	IPR003441	NAC domain
SuperFamily	SSF101941	4.45E-22	61	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MTCFWKFADS DTWNSGEQLQ NCDRDSVELV TSSVFDHPLP LSYGAMELHS RSSPGSWMYP 60 LLREIHRYFF TPRETMFPNG VGPKRANSDE YWKQTVPNKH IMYENKIVGY KMSFDFYEGG 120 HRNGRRTEWK MHEYRIHKNS PPPPPENSNA ADSMKTSYAQ TEMMWKV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-13	57	136	60	142	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-13	57	136	60	142	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-13	57	136	60	142	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-13	57	136	60	142	NO APICAL MERISTEM PROTEIN
3swm_A	3e-13	57	136	63	145	NAC domain-containing protein 19
3swm_B	3e-13	57	136	63	145	NAC domain-containing protein 19
3swm_C	3e-13	57	136	63	145	NAC domain-containing protein 19
3swm_D	3e-13	57	136	63	145	NAC domain-containing protein 19
3swp_A	3e-13	57	136	63	145	NAC domain-containing protein 19
3swp_B	3e-13	57	136	63	145	NAC domain-containing protein 19
3swp_C	3e-13	57	136	63	145	NAC domain-containing protein 19
3swp_D	3e-13	57	136	63	145	NAC domain-containing protein 19
3ulx_A	3e-13	68	136	72	140	Stress-induced transcription factor NAC1
4dul_A	3e-13	57	136	60	142	NAC domain-containing protein 19
4dul_B	3e-13	57	136	60	142	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	1e-17	NAC domain containing protein 83