PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn124361 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 168aa MW: 19671.1 Da PI: 7.6947 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.5 | 1.1e-18 | 65 | 136 | 56 | 128 |
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + yfF++r++ ++g ++ra ++ yWk+t +k+++ +++ vg k ++ fy+g +++g++t+W mheyr+ Achn124361 65 IHRYFFTPRETMFPNGVGPKRANSDEYWKQTVPNKHIMY-ENKIVGYKMSFDFYEGGHRNGRRTEWKMHEYRI 136 467************************************.9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 19.416 | 13 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-10 | 38 | 136 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.45E-22 | 61 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 168 aa Download sequence Send to blast |
MTCFWKFADS DTWNSGEQLQ NCDRDSVELV TSSVFDHPLP LSYGAMELHS RSSPGSWMYP 60 LLREIHRYFF TPRETMFPNG VGPKRANSDE YWKQTVPNKH IMYENKIVGY KMSFDFYEGG 120 HRNGRRTEWK MHEYRIHKNS PPPPPENSNA ADSMKTSYAQ TEMMWKV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-13 | 57 | 136 | 60 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-13 | 57 | 136 | 60 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-13 | 57 | 136 | 60 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-13 | 57 | 136 | 60 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-13 | 57 | 136 | 63 | 145 | NAC domain-containing protein 19 |
3swm_B | 3e-13 | 57 | 136 | 63 | 145 | NAC domain-containing protein 19 |
3swm_C | 3e-13 | 57 | 136 | 63 | 145 | NAC domain-containing protein 19 |
3swm_D | 3e-13 | 57 | 136 | 63 | 145 | NAC domain-containing protein 19 |
3swp_A | 3e-13 | 57 | 136 | 63 | 145 | NAC domain-containing protein 19 |
3swp_B | 3e-13 | 57 | 136 | 63 | 145 | NAC domain-containing protein 19 |
3swp_C | 3e-13 | 57 | 136 | 63 | 145 | NAC domain-containing protein 19 |
3swp_D | 3e-13 | 57 | 136 | 63 | 145 | NAC domain-containing protein 19 |
3ulx_A | 3e-13 | 68 | 136 | 72 | 140 | Stress-induced transcription factor NAC1 |
4dul_A | 3e-13 | 57 | 136 | 60 | 142 | NAC domain-containing protein 19 |
4dul_B | 3e-13 | 57 | 136 | 60 | 142 | NAC domain-containing protein 19 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-17 | NAC domain containing protein 83 |