PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn124291
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 242aa    MW: 27605 Da    PI: 4.8559
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn124291genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind106.81.7e-33271182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y ++ed++++ ++sw+++g++fvv+++ efa++vLp+ Fkhsnf+SFvRQLn+YgF+k+ +++         weF ++ F+kg+++ll++i+
    Achn124291  27 FLLKTYMLVEDPATDPVVSWNADGTAFVVWQPAEFARDVLPTLFKHSNFSSFVRQLNTYGFRKTATSR---------WEFCNDMFRKGERDLLCEIR 114
                   9***************************************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    Achn124291 115 RRKA 118
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-3618111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.18E-3222116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5123116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004478.0E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.9E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MESNENEKGG GGLVEYVMMR KSSPPPFLLK TYMLVEDPAT DPVVSWNADG TAFVVWQPAE  60
FARDVLPTLF KHSNFSSFVR QLNTYGFRKT ATSRWEFCND MFRKGERDLL CEIRRRKAWA  120
NKPQPAQPMP KESDEDQRSS STSSSSGYST LMDENKRLKR ENGVLNTELS SMRRKCKELL  180
DLVAAYAGSE KEEEEEEEDE EEDERPMLFG VRLEVEGGGE RKRKRAEISE SASLLLFQSC  240
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-201811611120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002323320.21e-121heat stress transcription factor B-3
SwissprotO222301e-70HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2R6Q4J51e-177A0A2R6Q4J5_ACTCH; Heat stress transcription factor B-3 like
STRINGPOPTR_0016s05680.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.12e-66heat shock transcription factor B3