PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn124211
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 417aa    MW: 46133.7 Da    PI: 9.0043
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn124211genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.24.3e-1363129155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse..ng....kr.....krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  ++  n+    k+     ++ s g ++ +e Aa+a++ a++k++g
  Achn124211  63 SIYRGVTRHRWTGRYEAHLWDkSTWnqNQnkkgKQgfaflRKLSTGAYDDEEAAARAYDLAALKYWG 129
                 57*******************7777752277773367899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-1063129IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1263138IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-1164138IPR001471AP2/ERF domain
PROSITE profilePS5103217.58364137IPR001471AP2/ERF domain
SMARTSM003809.1E-1664143IPR001471AP2/ERF domain
PRINTSPR003674.1E-56576IPR001471AP2/ERF domain
PRINTSPR003674.1E-5119139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MTSPSSESLK AEIGGGETSE GAVVATDQIS LYRGVKKAKR ERGCTAKERI SKMPPCAAGK  60
RSSIYRGVTR HRWTGRYEAH LWDKSTWNQN QNKKGKQGFA FLRKLSTGAY DDEEAAARAY  120
DLAALKYWGP GTLINFPVTD YTRDLEEMQN VSREEYLASL RRKSSGFSRG ISKYRGLSRP  180
CDLFDCTKGL GEDAATESEY AGGFCIDRKI DLTAYIKWWG SSKSRQSDSL TKSSDETKHG  240
HSDDIGSELK TLEWAIQPTE PYQMPRLGTL QERKNRKGST SSALSILSRS AAYKSLQEKA  300
AKKQEKSIEN DENENKCTIS KMDHGKAVEK LSHNVSSEEF GVAPSVGGGL PLQRNMYPLG  360
PFLSAPLLTS YNTIDPLSDP ILWTTLVPVL PPGPSRSAEV TKTETSSNYT FFQPEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028114076.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK21e-149AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A2R6Q4K00.0A0A2R6Q4K0_ACTCH; AP2-like ethylene-responsive transcription factor
STRINGGorai.003G091500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107341921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-145AP2 family protein