PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn123991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NF-YA | ||||||||
Protein Properties | Length: 244aa MW: 26592.7 Da PI: 9.8646 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.8 | 3.6e-33 | 9 | 65 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e ekkl +ksrkpylheSRh hA+rR+RgsgGrF Achn123991 9 EEPVYVNAKQYHGILRRRQSRAKAEMEKKL-IKSRKPYLHESRHLHAMRRARGSGGRF 65 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 5.7E-37 | 7 | 68 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.666 | 8 | 68 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.1E-28 | 10 | 65 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.5E-24 | 11 | 33 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 13 | 33 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.5E-24 | 42 | 65 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MALPLEVTEE PVYVNAKQYH GILRRRQSRA KAEMEKKLIK SRKPYLHESR HLHAMRRARG 60 SGGRFVNTKK LDGAAHNVTS DKVTGSGIGI SANYSNSLGS FSVSSNPPGN AGLPQVIILF 120 RIKGQMTETA INGFMGLDTL VFELIVTLMV CSSSNSFWAV SLVQIYLGGV NCEELELETL 180 FALNLRRVQG ESAICKNLAV QIHSSFLVKH LQIGVQVELQ GGLNSQALGH PVDWAKFGQI 240 CTS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 5e-24 | 9 | 72 | 2 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13392 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 1e-34 | nuclear factor Y, subunit A7 |