PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn123991
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YA
Protein Properties Length: 244aa    MW: 26592.7 Da    PI: 9.8646
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn123991genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.83.6e-33965158
   CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                +ep+YVNaKQy++Il+RRq+Rak+e ekkl +ksrkpylheSRh hA+rR+RgsgGrF
  Achn123991  9 EEPVYVNAKQYHGILRRRQSRAKAEMEKKL-IKSRKPYLHESRHLHAMRRARGSGGRF 65
                69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.7E-37768IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.666868IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-281065IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.5E-241133IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068601333IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.5E-244265IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MALPLEVTEE PVYVNAKQYH GILRRRQSRA KAEMEKKLIK SRKPYLHESR HLHAMRRARG  60
SGGRFVNTKK LDGAAHNVTS DKVTGSGIGI SANYSNSLGS FSVSSNPPGN AGLPQVIILF  120
RIKGQMTETA INGFMGLDTL VFELIVTLMV CSSSNSFWAV SLVQIYLGGV NCEELELETL  180
FALNLRRVQG ESAICKNLAV QIHSSFLVKH LQIGVQVELQ GGLNSQALGH PVDWAKFGQI  240
CTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-24972265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133921516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-34nuclear factor Y, subunit A7