PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn123541
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 389aa    MW: 43541.9 Da    PI: 7.0705
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn123541genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12322367655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++L +Av+YIk+Lq
  Achn123541 322 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 367
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.294316366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16319380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-12320371No hitNo description
Gene3DG3DSA:4.10.280.104.0E-15321378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9322367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-14322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MDSDRQLHHH QQQQPMSSGL MRNRSAPSSY FASLINSGGV GGGEICDDFL HPRYSSPETE  60
RFFSKFLSGV GTEDSSSHSQ SGVRKNSSLN EALQPQFAES RMHTTDIYQH HEHQQNSNYS  120
SSSQTIYQSQ SQSSLPNHNS ATSNSEMDKP YSMVSSMPMD SLNQMKMSSG GGGNSNLIRQ  180
SSSPAGFFSH INMDNERMTP ILENRSKNTE IRDPEDGGSR EGRRNDRGYI TGFPIGSWDD  240
SAIFSDNFPI EDDDDRKTFS VMNASENQNT EGGNRPPTVL SHHLSLPTSS AELSAMEKFL  300
HFQDSVPCKI RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV  360
DYIKELQNQV KTLSDKRARC TCLNKQKQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00646PBMTransfer from LOC_Os08g39630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028101126.11e-147transcription factor bHLH130-like isoform X2
TrEMBLA0A2R6P8950.0A0A2R6P895_ACTCH; Transcription factor bHLH130 like
STRINGXP_002513457.11e-120(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46052239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-66bHLH family protein