PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn123541 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 389aa MW: 43541.9 Da PI: 7.0705 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.1e-12 | 322 | 367 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L +Av+YIk+Lq Achn123541 322 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKELQ 367 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.294 | 316 | 366 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-16 | 319 | 380 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.01E-12 | 320 | 371 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-15 | 321 | 378 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-9 | 322 | 367 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-14 | 322 | 372 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MDSDRQLHHH QQQQPMSSGL MRNRSAPSSY FASLINSGGV GGGEICDDFL HPRYSSPETE 60 RFFSKFLSGV GTEDSSSHSQ SGVRKNSSLN EALQPQFAES RMHTTDIYQH HEHQQNSNYS 120 SSSQTIYQSQ SQSSLPNHNS ATSNSEMDKP YSMVSSMPMD SLNQMKMSSG GGGNSNLIRQ 180 SSSPAGFFSH INMDNERMTP ILENRSKNTE IRDPEDGGSR EGRRNDRGYI TGFPIGSWDD 240 SAIFSDNFPI EDDDDRKTFS VMNASENQNT EGGNRPPTVL SHHLSLPTSS AELSAMEKFL 300 HFQDSVPCKI RAKRGCATHP RSIAERVRRT RISERMRKLQ ELVPNMDKQT NTADMLDLAV 360 DYIKELQNQV KTLSDKRARC TCLNKQKQ* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028101126.1 | 1e-147 | transcription factor bHLH130-like isoform X2 | ||||
TrEMBL | A0A2R6P895 | 0.0 | A0A2R6P895_ACTCH; Transcription factor bHLH130 like | ||||
STRING | XP_002513457.1 | 1e-120 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 2e-66 | bHLH family protein |