PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn122301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | C2H2 | ||||||||
Protein Properties | Length: 442aa MW: 50562.7 Da PI: 9.9184 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14 | 0.00014 | 325 | 350 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+C C++sF +k +L+ H r+ + Achn122301 325 YTCDmeGCTMSFDSKQELVLHKRNvC 350 99********************9877 PP | |||||||
2 | zf-C2H2 | 15.2 | 6e-05 | 349 | 372 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L++H r+H Achn122301 349 VCPvkGCGKKFFSHKYLVQHRRVH 372 69999*****************99 PP | |||||||
3 | zf-C2H2 | 13.6 | 0.0002 | 408 | 434 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ Cg++F+ s++ rH r+ H Achn122301 408 YVCTeaGCGQTFRFVSDFSRHKRKtgH 434 99*********************9776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 11 | 325 | 347 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.632 | 348 | 377 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.84E-7 | 348 | 385 | No hit | No description |
SMART | SM00355 | 0.0037 | 348 | 372 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.3E-6 | 349 | 371 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 350 | 372 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.6E-6 | 372 | 384 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0011 | 378 | 402 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.341 | 378 | 407 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 380 | 402 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.5E-5 | 385 | 400 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.98E-10 | 388 | 432 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-10 | 401 | 431 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.783 | 408 | 439 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.19 | 408 | 434 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 410 | 434 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MVIFGEKFAD YPELENEAKL VAEELGIDYC WNDVAFREAD EEDEERIQLA LESDVAVHGN 60 CDWAVKLGIH LYYSANLSRS PLYRKQMPYS SIIYKAFGSS ALVNSVTKPK VYERRSSKQK 120 KIVVAGKWCG KVWMSNQVHP LLAGRDTEDV GEEGRTFHAQ AKREVKHERF SESTLAAETI 180 SAIRKTGKKR KSTREAGAMM KLKYQKMQEL GKASEDSPDE GYDQQYKRNI RSKNGKSETP 240 RSERSCDPNA RRFELCIEDE LDSGPSTCLR KRSLKPSKDL VLKKLIQSKP ILKKKTISKK 300 ANNSPAVKTL VAHNNTNMRD EEGEYTCDME GCTMSFDSKQ ELVLHKRNVC PVKGCGKKFF 360 SHKYLVQHRR VHVDDRPLKC PWKGCKRTFK WAWARTEHIR VHTGERPYVC TEAGCGQTFR 420 FVSDFSRHKR KTGHHAKKGR G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6a57_A | 3e-68 | 325 | 438 | 23 | 136 | Lysine-specific demethylase REF6 |
6a58_A | 3e-68 | 325 | 438 | 23 | 136 | Lysine-specific demethylase REF6 |
6a59_A | 3e-68 | 325 | 438 | 23 | 136 | Lysine-specific demethylase REF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028116351.1 | 0.0 | lysine-specific demethylase REF6-like | ||||
TrEMBL | A0A2R6PUP2 | 0.0 | A0A2R6PUP2_ACTCH; Lysine-specific demethylase | ||||
STRING | VIT_17s0000g09980.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4988 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48430.1 | 1e-66 | relative of early flowering 6 |