PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn122301
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 442aa    MW: 50562.7 Da    PI: 9.9184
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn122301genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014325350123
                 EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                 y+C    C++sF +k +L+ H r+ +
  Achn122301 325 YTCDmeGCTMSFDSKQELVLHKRNvC 350
                 99********************9877 PP
2zf-C2H215.26e-05349372223
                 EET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                 +Cp   Cgk F ++ +L++H r+H
  Achn122301 349 VCPvkGCGKKFFSHKYLVQHRRVH 372
                 69999*****************99 PP
3zf-C2H213.60.0002408434123
                 EEET..TTTEEESSHHHHHHHHHH..T CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                 y+C+   Cg++F+  s++ rH r+  H
  Achn122301 408 YVCTeaGCGQTFRFVSDFSRHKRKtgH 434
                 99*********************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035511325347IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.632348377IPR007087Zinc finger, C2H2
SuperFamilySSF576678.84E-7348385No hitNo description
SMARTSM003550.0037348372IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-6349371IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280350372IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.6E-6372384IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0011378402IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.341378407IPR007087Zinc finger, C2H2
PROSITE patternPS000280380402IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-5385400IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.98E-10388432No hitNo description
Gene3DG3DSA:3.30.160.601.0E-10401431IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.783408439IPR007087Zinc finger, C2H2
SMARTSM003550.19408434IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280410434IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVIFGEKFAD YPELENEAKL VAEELGIDYC WNDVAFREAD EEDEERIQLA LESDVAVHGN  60
CDWAVKLGIH LYYSANLSRS PLYRKQMPYS SIIYKAFGSS ALVNSVTKPK VYERRSSKQK  120
KIVVAGKWCG KVWMSNQVHP LLAGRDTEDV GEEGRTFHAQ AKREVKHERF SESTLAAETI  180
SAIRKTGKKR KSTREAGAMM KLKYQKMQEL GKASEDSPDE GYDQQYKRNI RSKNGKSETP  240
RSERSCDPNA RRFELCIEDE LDSGPSTCLR KRSLKPSKDL VLKKLIQSKP ILKKKTISKK  300
ANNSPAVKTL VAHNNTNMRD EEGEYTCDME GCTMSFDSKQ ELVLHKRNVC PVKGCGKKFF  360
SHKYLVQHRR VHVDDRPLKC PWKGCKRTFK WAWARTEHIR VHTGERPYVC TEAGCGQTFR  420
FVSDFSRHKR KTGHHAKKGR G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A3e-6832543823136Lysine-specific demethylase REF6
6a58_A3e-6832543823136Lysine-specific demethylase REF6
6a59_A3e-6832543823136Lysine-specific demethylase REF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028116351.10.0lysine-specific demethylase REF6-like
TrEMBLA0A2R6PUP20.0A0A2R6PUP2_ACTCH; Lysine-specific demethylase
STRINGVIT_17s0000g09980.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49882331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-66relative of early flowering 6