PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn121981

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Dof

Protein Properties

Length: 433aa MW: 48383.4 Da PI: 8.4218

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn121981	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.7	4.5e-37	201	261	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC st+tkfCyynny+ +qPr+fCk+C+ryWt+GG+ rnvPvG+grrknk+s Achn121981 201 PDKVLPCPRCASTDTKFCYYNNYNPNQPRHFCKSCQRYWTAGGTTRNVPVGAGRRKNKNSA 261 78999*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	188	258	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-30	202	259	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.062	205	259	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	207	243	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MVTCQMESLK IRNQFRPRKD SHSSNLYTDR ERRKPKPHGR NDPFTARIIS ASFFSSFLVH 60 FLGDFPGEKR KTMKEARDTT IKLFGKRILV PESGQILDVS GDNYTEDCGF KYRKFEIDRS 120 RSMVIACLDD EKVSRTGDTE QGGEEKEAEG EEPANPGKLG ESDENPKTPS GDEETATTKP 180 PNTENDETDR RNQHEKPLQK PDKVLPCPRC ASTDTKFCYY NNYNPNQPRH FCKSCQRYWT 240 AGGTTRNVPV GAGRRKNKNS ASHCRHVIIS DPLLAAPSGI HHPRVLSFAP QTPVCEINFV 300 DKNVPDGFYK FEKDNGSSGS SVTTSNSKDE GDGKVLQEQI QGNSNSFAFQ IPCLPGIPWP 360 CPLKSLVPIG FPMPFYPAPY WNCTMPGAWT VPCLSPPNPT TKETLGKHSR DGNLLKPKNS 420 DVERSILIPK NL*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MVTCQMESLK IRNQFRPRKD SHSSNLYTDR ERRKPKPHGR NDPFTARIIS ASFFSSFLVH  60
FLGDFPGEKR KTMKEARDTT IKLFGKRILV PESGQILDVS GDNYTEDCGF KYRKFEIDRS  120
RSMVIACLDD EKVSRTGDTE QGGEEKEAEG EEPANPGKLG ESDENPKTPS GDEETATTKP  180
PNTENDETDR RNQHEKPLQK PDKVLPCPRC ASTDTKFCYY NNYNPNQPRH FCKSCQRYWT  240
AGGTTRNVPV GAGRRKNKNS ASHCRHVIIS DPLLAAPSGI HHPRVLSFAP QTPVCEINFV  300
DKNVPDGFYK FEKDNGSSGS SVTTSNSKDE GDGKVLQEQI QGNSNSFAFQ IPCLPGIPWP  360
CPLKSLVPIG FPMPFYPAPY WNCTMPGAWT VPCLSPPNPT TKETLGKHSR DGNLLKPKNS  420
DVERSILIPK NL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028113731.1	1e-116	cyclic dof factor 3-like
TrEMBL	A0A2R6PU70	0.0	A0A2R6PU70_ACTCH; Cyclic dof factor like
STRING	PGSC0003DMT400050273	1e-106	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-51	cycling DOF factor 3