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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn121971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 170aa MW: 18762.8 Da PI: 5.8827 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 71.6 | 1.3e-22 | 23 | 74 | 2 | 58 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++rY++C+kNh a++G ha+DGC Efm+s +a+ l C CgCHRnFH ++ + Achn121971 23 TNIRYEDCRKNHGARMGKHATDGCLEFMAS-----DAENLMCDVCGCHRNFHTKKLV 74 579**************************9.....5778*************99865 PP | |||||||
2 | ZF-HD_dimer | 83.8 | 1.9e-26 | 84 | 143 | 2 | 60 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGgha.vDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++v+Y++C kNhA+++G ++ DGC Efm+segeeg+ +al CaACgCHRnFHR+ +e+e Achn121971 84 SEVKYEDCCKNHAVRMGKYSsSDGCLEFMASEGEEGSRDALMCAACGCHRNFHRKIEEKE 143 689**************98537*********************************88765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 6.0E-11 | 21 | 73 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.7E-19 | 25 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-18 | 26 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 20.249 | 27 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.2E-23 | 86 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 3.0E-13 | 86 | 145 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.0E-21 | 87 | 138 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 17.384 | 88 | 139 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MSDIKEDAVN KDCSNATSTV QTTNIRYEDC RKNHGARMGK HATDGCLEFM ASDAENLMCD 60 VCGCHRNFHT KKLVRADETS RINSEVKYED CCKNHAVRMG KYSSSDGCLE FMASEGEEGS 120 RDALMCAACG CHRNFHRKIE EKEEVGGKRP ALSPPSGGAA YYSSDDYYD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028117445.1 | 3e-47 | zinc-finger homeodomain protein 3-like isoform X2 | ||||
Swissprot | Q9LJW5 | 4e-17 | MIF2_ARATH; Mini zinc finger protein 2 | ||||
TrEMBL | A0A2R6PUE4 | 1e-119 | A0A2R6PUE4_ACTCH; Zinc-finger homeodomain protein | ||||
STRING | XP_002534013.1 | 7e-18 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 5e-19 | mini zinc finger 2 |
Publications ? help Back to Top | |||
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