PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn118011
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GRAS
Protein Properties Length: 435aa    MW: 48541.8 Da    PI: 6.2939
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn118011genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS311.42e-95454312373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsevsPilkfsh 95 
                 ++lL++cA+a++++d++laq++L+ l+++a pdgd++qRl+  f++AL ar ar  s+++k l +++ +  n    ++++++ +l  f++++P+++f++
  Achn118011  45 EQLLVHCATAIETNDATLAQQILWVLNNIAVPDGDSNQRLTCGFLRALVARAAR--SGTCKMLMTTAVAAANlaiATHKFSIIELagFVDLTPWHRFGF 141
                 79****************************************************..8888888777777777455444444444488************ PP

        GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl.......vak 184
                  +aN aIleaveg   vHiiD+++++++Q p+L++++a+R egpp +++T+ g+ e +      ++ee+g +L +fA++ +v++ef+v+        ++
  Achn118011 142 TAANAAILEAVEGFPVVHIIDLSLTHCMQIPTLIDSIANRLEGPPLVKLTVAGPTEDVppmLDLSYEELGTKLVNFAKSRNVTMEFRVIpssssdgFST 240
                 ******************************************************887798888999**********************98765554444 PP

        GRAS 185 rledleleeL.rvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                  +e++++++L + k++Eal++n++++lh++++e++ ++    +r+ +L++v+sl P+++v+v+++ad++s +++ r+  a++y +  +d++++ lpr s
  Achn118011 241 FIEQIRIQNLlHSKNREALVINSHMMLHYIPEETLLSSPspsYRTMFLEAVRSLDPTIMVLVDEDADLTSRNLVIRLRAAFNYLWIPYDTVDTFLPRGS 339
                 555566665535556****************998644333559******************************************************** PP

        GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 e+r+++E+  l ++i+nvva+ega+r+er e +++W +r+++aGF+ v +se+ + +++++l +++  g+ ++ e++ lvl+Wk++++v++++W
  Achn118011 340 EQRKWYEAD-LCWRIKNVVAAEGAQRVERLEPKGRWVQRMRSAGFRGVGFSEEGVGEVRSMLDEHA-AGWGLKREEEDLVLTWKGHNVVFATVW 431
                 *********.99******************************************************.8999*********************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.84618413IPR005202Transcription factor GRAS
PfamPF035146.7E-9345431IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MQFTETPQPP PPRFHAMNNK NQIRPWPSFP TSKALGNFGD ANCMEQLLVH CATAIETNDA  60
TLAQQILWVL NNIAVPDGDS NQRLTCGFLR ALVARAARSG TCKMLMTTAV AAANLAIATH  120
KFSIIELAGF VDLTPWHRFG FTAANAAILE AVEGFPVVHI IDLSLTHCMQ IPTLIDSIAN  180
RLEGPPLVKL TVAGPTEDVP PMLDLSYEEL GTKLVNFAKS RNVTMEFRVI PSSSSDGFST  240
FIEQIRIQNL LHSKNREALV INSHMMLHYI PEETLLSSPS PSYRTMFLEA VRSLDPTIMV  300
LVDEDADLTS RNLVIRLRAA FNYLWIPYDT VDTFLPRGSE QRKWYEADLC WRIKNVVAAE  360
GAQRVERLEP KGRWVQRMRS AGFRGVGFSE EGVGEVRSML DEHAAGWGLK REEEDLVLTW  420
KGHNVVFATV WVPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-482743376474Protein SHORT-ROOT
5b3h_B2e-482743322420Protein SHORT-ROOT
5b3h_E2e-482743322420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279517.30.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN220.0SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2R6PA980.0A0A2R6PA98_ACTCH; Scarecrow-like protein
STRINGVIT_07s0129g00340.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-173GRAS family protein