PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn116231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 1634aa    MW: 182137 Da    PI: 7.4965
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn116231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.3e-23137238199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + +++el+
  Achn116231 137 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELR 232
                 99*****************************7333.34459************************************************..449999** PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 v+v+r+
  Achn116231 233 VGVRRA 238
                 ***996 PP
2Auxin_resp1141.4e-37263345183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha +t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg+ d+dp rW++SkWr+Lk
  Achn116231 263 AWHAYTTGTIFTVYYKPRTSPAEFIVPFDQFMESFKSNYSIGMRFKMRFEGEEVPEQRFTGTIVGIDDADPQRWTESKWRCLK 345
                 79*******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-41134252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-40134266IPR015300DNA-binding pseudobarrel domain
CDDcd100172.12E-21135237No hitNo description
PROSITE profilePS5086312.012137239IPR003340B3 DNA binding domain
SMARTSM010192.0E-23137239IPR003340B3 DNA binding domain
PfamPF023622.7E-21137238IPR003340B3 DNA binding domain
PfamPF065071.4E-34263345IPR010525Auxin response factor
PfamPF023093.1E-11560650IPR033389AUX/IAA domain
PROSITE profilePS5174523.764565647IPR000270PB1 domain
SuperFamilySSF542776.87E-12567644No hitNo description
Gene3DG3DSA:1.10.1780.107.7E-49785924IPR004176Clp, N-terminal
SuperFamilySSF819232.9E-30787920IPR004176Clp, N-terminal
PfamPF028614.9E-17800852IPR004176Clp, N-terminal
PfamPF028611.5E-17876922IPR004176Clp, N-terminal
SuperFamilySSF525401.75E-779411243IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.4E-499421124IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000091.58E-229641116No hitNo description
SMARTSM003828.9E-149811126IPR003593AAA+ ATPase domain
PfamPF000042.7E-149861102IPR003959ATPase, AAA-type, core
PROSITE patternPS00870010761088IPR018368ClpA/B, conserved site 1
Gene3DG3DSA:1.10.8.603.2E-3111251217No hitNo description
PfamPF021513.0E-812081243IPR001943UVR domain
PROSITE profilePS5015111.57412081243IPR001943UVR domain
SuperFamilySSF525404.83E-7712831599IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.5E-5512881460IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000096.73E-2013081456No hitNo description
PfamPF077246.9E-5313331509IPR003959ATPase, AAA-type, core
SMARTSM003822.8E-1213341517IPR003593AAA+ ATPase domain
PRINTSPR003001.1E-3913381356IPR001270ClpA/B family
PROSITE patternPS00871013681386IPR028299ClpA/B, conserved site 2
PRINTSPR003001.1E-3913831401IPR001270ClpA/B family
PRINTSPR003001.1E-3914121430IPR001270ClpA/B family
PRINTSPR003001.1E-3914451459IPR001270ClpA/B family
Gene3DG3DSA:3.40.50.3003.5E-5514991527IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM010861.0E-2515161607IPR019489Clp ATPase, C-terminal
PfamPF104315.5E-2115181595IPR019489Clp ATPase, C-terminal
Gene3DG3DSA:1.10.8.603.2E-2415281605No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0019538Biological Processprotein metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1634 aa     Download sequence    Send to blast
MASSDVSFKG NTKGESFSSV SGAGKVDAET ALYTELWRAC AGPLVTVPRE GERVFYFPQG  60
HIEQVEASTN QVSDQEMPVY NLPSKVLCRV INVQLKAEPD TDEVFAQVTL HPLKEDENEV  120
GKEPVPPPLP RFHVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR QPPTQELVAK  180
DLHGNEWRFR HIFRGQPRRH LLQSGWSVFV SSKRLVAGDA FIFLRGENGE LRVGVRRAMR  240
QQSNVPSSVI SSHSMHLGVL ATAWHAYTTG TIFTVYYKPR TSPAEFIVPF DQFMESFKSN  300
YSIGMRFKMR FEGEEVPEQR FTGTIVGIDD ADPQRWTESK WRCLKVRWDE TSMIPRPERV  360
SPWKIEPALT PPALNPLPVP RSKRHRSNMV PSSPDSSVLT REGSSKVTID PLPASGYSRV  420
LQGQEFSTLR SPLAESNKSE SSEKPVVWPP TREDEKIDVF SVSQRYGPLV KPQSTFTNLF  480
SGNCNPVAAE SAQSHKNTYL PEAHSNLVPH SQQSWAFETD QRSEQRDGVK VSNHTIPSSE  540
QENPSPTSQP TIRDRQGKVQ GGSTRSCTKV HKQGIALGRS VDLTKFNGYE ELIDELDQLF  600
EFNGELKAHN KNWLIVYTDD EGDMMLVGDD PWMEFCDIVR KISIYTREEV QRMNPGALIS  660
KREENSLVGE GTNDKEVKNS TSPLAPSPKK YHLEEVMARA LVQSTIFPSS IAVERHDRLK  720
GSGRTKRTVK MMCALQSSPL RSFSGLRGSN ALDSVVRSGH GFHSKAATAT SVRRKKASRF  780
VPKAMFERFT EKAIKVIMLA QEEARRLGHN FVGTEQILLG LIGEGTGIAA KVLKSMGINL  840
KDARVEVEKI IGRGSGFVAV EIPFTPRAKR VLELSLEEAR QLGHNYIGSE HLLLGLLREG  900
EGVAARVLEN LGADPNNIRT QAKSTEAVGA GVGVGSSGNK MPTLEEYGTN LTKLAEEGKL  960
DPVVGRQPQI ERVTQILGRR TKNNPCLIGE PGVGKTAIAE GLAQQIASGD VPETIEGKKV  1020
ITLDMGLLVA GTKYRGEFEE RLKKLMEEVK QSDEIILFID EVHTLIGAGA AEGAIDAANI  1080
LKPALARGEL QCIGATTLDE YRKHIEKDPA LERRFQPVTV PEPTVDETIQ ILKGLRERYE  1140
IHHKLRYTDE ALVAAAKLSH QYISDRFLPD KAIDLIDEAG ARVRLRHAQV VESHLCSSQL  1200
PEEARELEKE LKQITKEKNE AVRGQDFEKA GELRDREINL RAQITAFLDK SKEMSKAETE  1260
AGDGGPVVTE ADVQHIVCSW TGIPVEKVSA DESDRLLKME ETLHKRIIGQ NEAVEAISRA  1320
IRRARVGLKN PNRPIASFIF CGPTGVGKSE LAKAIAAYYF GSEESMIRLD MSEFMERHTI  1380
SKLIGSPPGY VGYTEGGQLT EAVRRRPYTV ILFDEIEKAH PDVFNLMLQI LEDGRLTDGK  1440
GRTVDFKNTL LIMTSNVGGD VVSGKSRDIL SGLGFKQPEK STDYGDIKNQ VVEKLKTYFR  1500
PEFLNRLDDV IVFRQLEWKE VETIASLMLK EVCDRLKTKE IELQVTEYFV DKVVREGYSR  1560
SYGARPLRRA IMRLLEDSMA EKMLTREFKE GDSVVADIDP EDGKVIVYHR RVPRPLSKPP  1620
KLTGRRIPAP TAS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3j3s_A0.078516072803Negative regulator of genetic competence ClpC/MecB
3j3s_B0.078516072803Negative regulator of genetic competence ClpC/MecB
3j3s_C0.078516072803Negative regulator of genetic competence ClpC/MecB
3j3s_D0.078516072803Negative regulator of genetic competence ClpC/MecB
3j3s_E0.078516072803Negative regulator of genetic competence ClpC/MecB
3j3s_F0.078516072803Negative regulator of genetic competence ClpC/MecB
3j3t_A0.078516072803Negative regulator of genetic competence ClpC/MecB
3j3t_B0.078516072803Negative regulator of genetic competence ClpC/MecB
3j3t_C0.078516072803Negative regulator of genetic competence ClpC/MecB
3j3t_D0.078516072803Negative regulator of genetic competence ClpC/MecB
3j3t_E0.078516072803Negative regulator of genetic competence ClpC/MecB
3j3t_F0.078516072803Negative regulator of genetic competence ClpC/MecB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay interact with a ClpP-like protease involved in degradation of denatured proteins in the chloroplast.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022987153.10.0chaperone protein ClpC, chloroplastic-like isoform X4
SwissprotP315420.0CLPAB_SOLLC; ATP-dependent Clp protease ATP-binding subunit ClpA homolog CD4B, chloroplastic
TrEMBLA0A2R6PUT90.0A0A2R6PUT9_ACTCH; ATP-dependent Clp protease ATP-binding subunit ClpA CD4B like
STRINGXP_009769540.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Gottesman S, et al.
    Conservation of the regulatory subunit for the Clp ATP-dependent protease in prokaryotes and eukaryotes.
    Proc. Natl. Acad. Sci. U.S.A., 1990. 87(9): p. 3513-7
    [PMID:2185473]