PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn115041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | AP2 | ||||||||
Protein Properties | Length: 486aa MW: 54202 Da PI: 6.4477 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.8 | 4.6e-12 | 217 | 273 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e+Aa+a++ a++k++g Achn115041 217 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 273 78*******************433.44554535555.779999**************98 PP | |||||||
2 | AP2 | 34 | 7.5e-11 | 305 | 350 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 r+++++grW A+I + +k +lg+f t e Aa+a++ a+ k++g Achn115041 305 RRHHQNGRWQARIGRVAG---NKDLYLGTFSTQEAAAEAYDIAAIKFRG 350 899*********988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.2E-9 | 217 | 273 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.02E-19 | 217 | 283 | No hit | No description |
SuperFamily | SSF54171 | 6.34E-15 | 217 | 283 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.4E-23 | 218 | 287 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-13 | 218 | 282 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.609 | 218 | 281 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-6 | 219 | 230 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.463 | 297 | 358 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.7E-5 | 305 | 350 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.2E-26 | 306 | 364 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-14 | 306 | 359 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-15 | 306 | 358 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-6 | 340 | 360 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MSNWLGFSLT PHLRVNDEVL EREEEEHQER GDCFSSNMSS VMPLSSDEWR SYDNTMGENT 60 PKLEDFLGCC YPNSPPNVPK MYCQQEDTLI NLNHPNQDMI NQNTNISTNP SPFIQTCPYN 120 SFQTCDLNPN ISHNMYPYHV PFDGANSVSG FKSWLRETPY LGHEKCDGNS TLQSHSLALS 180 ATVENGGGAV VADGGRKTTG RESVPRKSIN TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC 240 RKEGQSRKGR QGGYDKEEKA ARAYDLAALK YWGPNTHINF PLSTYEKEFE EMKNMTRQEF 300 VARLRRHHQN GRWQARIGRV AGNKDLYLGT FSTQEAAAEA YDIAAIKFRG TSAVTNFDIH 360 RYDVKRICSS PTLIGGDLAK RSSKDSAPTS VEEYNSCASS APPILAITNG VPSNEFVTDT 420 SADSEIPSPK GSVVLGDDSQ AYFELQVPKC GDGNDEIGTN RIGNLGLVRP QVPTFALWNA 480 SRVQM* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022777228.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-113 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A2R6PVF3 | 0.0 | A0A2R6PVF3_ACTCH; AP2-like ethylene-responsive transcription factor | ||||
STRING | EOY27240 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8777 | 21 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-103 | AP2 family protein |
Publications ? help Back to Top | |||
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