PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn115041
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 486aa    MW: 54202 Da    PI: 6.4477
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn115041genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.84.6e-12217273155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Achn115041 217 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 273
                 78*******************433.44554535555.779999**************98 PP
2AP2347.5e-11305350755
         AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 r+++++grW A+I  +     +k  +lg+f t e Aa+a++ a+ k++g
  Achn115041 305 RRHHQNGRWQARIGRVAG---NKDLYLGTFSTQEAAAEAYDIAAIKFRG 350
                 899*********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-9217273IPR001471AP2/ERF domain
CDDcd000181.02E-19217283No hitNo description
SuperFamilySSF541716.34E-15217283IPR016177DNA-binding domain
SMARTSM003802.4E-23218287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-13218282IPR001471AP2/ERF domain
PROSITE profilePS5103217.609218281IPR001471AP2/ERF domain
PRINTSPR003672.0E-6219230IPR001471AP2/ERF domain
PROSITE profilePS5103216.463297358IPR001471AP2/ERF domain
PfamPF008472.7E-5305350IPR001471AP2/ERF domain
SMARTSM003805.2E-26306364IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-14306359IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-15306358IPR001471AP2/ERF domain
PRINTSPR003672.0E-6340360IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRVNDEVL EREEEEHQER GDCFSSNMSS VMPLSSDEWR SYDNTMGENT  60
PKLEDFLGCC YPNSPPNVPK MYCQQEDTLI NLNHPNQDMI NQNTNISTNP SPFIQTCPYN  120
SFQTCDLNPN ISHNMYPYHV PFDGANSVSG FKSWLRETPY LGHEKCDGNS TLQSHSLALS  180
ATVENGGGAV VADGGRKTTG RESVPRKSIN TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC  240
RKEGQSRKGR QGGYDKEEKA ARAYDLAALK YWGPNTHINF PLSTYEKEFE EMKNMTRQEF  300
VARLRRHHQN GRWQARIGRV AGNKDLYLGT FSTQEAAAEA YDIAAIKFRG TSAVTNFDIH  360
RYDVKRICSS PTLIGGDLAK RSSKDSAPTS VEEYNSCASS APPILAITNG VPSNEFVTDT  420
SADSEIPSPK GSVVLGDDSQ AYFELQVPKC GDGNDEIGTN RIGNLGLVRP QVPTFALWNA  480
SRVQM*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022777228.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-113AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2R6PVF30.0A0A2R6PVF3_ACTCH; AP2-like ethylene-responsive transcription factor
STRINGEOY272400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-103AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]