PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn114711

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

Trihelix

Protein Properties

Length: 393aa MW: 45164.1 Da PI: 4.421

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn114711	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.7	4e-15	158	242	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ + +r++l+ W+evs+k+ +e + er+ +qC+++++ l+k+ykk+k + ++ +s++ yf++++ Achn114711 158 WTEHETFVLLDAWGDRFLKRGRKSLRSEEWQEVSEKVtHESKSERTDTQCRNRLDTLKKKYKKEKVKLDES-KGMTSKWLYFSKMD 242 ***********************************889999********************9995.88889******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.3E-20	157	244	No hit	No description
PROSITE profile	PS50090	6.249	158	215	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.9E-4	172	229	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MDNTEDDAKY PANPYGVTQG YGSSQRPKLP VQSSSYPQQI GDQYVDDYVG YDEEDEEEVD 60 EEEDDNNGNS QIVKVENDDD DIVDDDDSDD ENEDDDEDQQ NGYSRRIGDD DLERHQKKRK 120 LKSLLSSYEF APRMVPSQVV DASASKPSSG RRNSLADWTE HETFVLLDAW GDRFLKRGRK 180 SLRSEEWQEV SEKVTHESKS ERTDTQCRNR LDTLKKKYKK EKVKLDESKG MTSKWLYFSK 240 MDMLMSSSPN QLGLSCGVDS GEYVFMNPKV YLNRSNGLDE MRDSPGNSES AKGEKDDSDG 300 LPPKRSRMGR DRDDGASFRL LADSIEKFSE LYEKTENSKR QQMLELEKMR MDFHRELELH 360 KRQILERAQS EIAKIRHGDN EENDLSAENV SG*

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MDNTEDDAKY PANPYGVTQG YGSSQRPKLP VQSSSYPQQI GDQYVDDYVG YDEEDEEEVD  60
EEEDDNNGNS QIVKVENDDD DIVDDDDSDD ENEDDDEDQQ NGYSRRIGDD DLERHQKKRK  120
LKSLLSSYEF APRMVPSQVV DASASKPSSG RRNSLADWTE HETFVLLDAW GDRFLKRGRK  180
SLRSEEWQEV SEKVTHESKS ERTDTQCRNR LDTLKKKYKK EKVKLDESKG MTSKWLYFSK  240
MDMLMSSSPN QLGLSCGVDS GEYVFMNPKV YLNRSNGLDE MRDSPGNSES AKGEKDDSDG  300
LPPKRSRMGR DRDDGASFRL LADSIEKFSE LYEKTENSKR QQMLELEKMR MDFHRELELH  360
KRQILERAQS EIAKIRHGDN EENDLSAENV SG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021659266.1	1e-168	trihelix transcription factor ASIL1-like
TrEMBL	A0A2R6PV59	0.0	A0A2R6PV59_ACTCH; Trihelix transcription factor
STRING	VIT_09s0002g04700.t01	1e-166	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7230	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	7e-76	Trihelix family protein