PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn111511
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 671aa    MW: 73766.8 Da    PI: 5.547
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn111511genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.89e-1456951756
                HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 +F+++++p+ ++r++L ++lgL+  qVk+WFqN+R+++k
  Achn111511 56 HFFKECPHPDDKQRKDLGRRLGLEPLQVKFWFQNKRTQMK 95
                6899*********************************998 PP
2START477e-16225302169
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCG CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddk 69 
                 ela +a++e++++a+a+ep+W+ s+    e++ +de+l++f+++ +      ++ea+r+s+vv+m++++lve+l+d++
  Achn111511 225 ELAVTAMEEFIRMAQAGEPLWMPSPdnstEILSEDEYLRTFPRGIGpkplgLKSEASRESAVVIMNHVNLVEILMDVM 302
                 57899**********************999*************999******************************98 PP
3START141.11.1e-4430141193206
                 EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHH CS
       START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgla 190
                 +m+ae+q++splvp R+ +fvRy++q+ +g+wv+vdvS+d+ ++      + R++++pSg+li++++ng+skv+wvehv++++r +h+++r+lv+sgla
  Achn111511 301 VMTAEFQVPSPLVPtRENYFVRYCKQHADGTWVVVDVSLDNLRPSA----ISRCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRAVHNIYRPLVNSGLA 395
                 699****************************************976....7************************************************ PP

                 HHHHHHHHHTXXXXXX CS
       START 191 egaktwvatlqrqcek 206
                 +gak+wvatl+rqce+
  Achn111511 396 FGAKRWVATLDRQCER 411
                 **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000863.88E-124898No hitNo description
SMARTSM003898.4E-949101IPR001356Homeobox domain
SuperFamilySSF466893.02E-1251102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-1355105IPR009057Homeodomain-like
PfamPF000462.2E-115695IPR001356Homeobox domain
PROSITE profilePS5007112.9735897IPR001356Homeobox domain
PROSITE profilePS5084831.979216414IPR002913START domain
SuperFamilySSF559619.62E-32216413No hitNo description
CDDcd088752.84E-106220410No hitNo description
SMARTSM002346.9E-48225411IPR002913START domain
Gene3DG3DSA:3.30.530.202.6E-6299411IPR023393START-like domain
PfamPF018529.1E-37302411IPR002913START domain
SuperFamilySSF559613.04E-24430661No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MFESPHLLDM AHKTPENELE IIRDMDEFES KSGTDIMEAP SGDDQEDPNQ RPRKKHFFKE  60
CPHPDDKQRK DLGRRLGLEP LQVKFWFQNK RTQMKAQHER HENSQLRTEN EKLRAENIRY  120
KEALSNATCP NCGGPAAIGE MSFDEQHLRI ENVRLREEID RISGIAAKYV GKPMFSYPYG  180
TPRSLDLGIG NFGTQTGLVG DLYGAGDFLR SVSGPTEADK PLIIELAVTA MEEFIRMAQA  240
GEPLWMPSPD NSTEILSEDE YLRTFPRGIG PKPLGLKSEA SRESAVVIMN HVNLVEILMD  300
VMTAEFQVPS PLVPTRENYF VRYCKQHADG TWVVVDVSLD NLRPSAISRC RRRPSGCLIQ  360
ELPNGYSKVI WVEHVEVDDR AVHNIYRPLV NSGLAFGAKR WVATLDRQCE RLASAMANNI  420
PAGDVGVITT PEGRKSMMKL AERMVLSFCA GVGASTTHMW TTLSGSGADD VRVMTRKSMD  480
DPGRPPGIVL SAATSFWLPV PPKRVFDFLR DENSRSEWDI LSNGGLVQEM AHIANGRDPG  540
NSVSLLRVNS ANSSQSNMLI LQESCTVTTG SYVIYAPVDI VAMNMVLNGG DPEYVSLLPS  600
GFAILPVGPT HHGGGIQEAG SGESLLTVAF QILVDSVPTA KLSLGSVATV NSLIKCTVET  660
IKSSVGGENA *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028124330.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124331.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124332.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124333.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124334.10.0homeobox-leucine zipper protein MERISTEM L1-like
RefseqXP_028124335.10.0homeobox-leucine zipper protein MERISTEM L1-like
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLA0A2R6QLS00.0A0A2R6QLS0_ACTCH; Homeobox-leucine zipper protein like
STRINGVIT_10s0116g00680.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9322491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]