PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn108861
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 851aa    MW: 93052.4 Da    PI: 6.5773
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn108861genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-182784457
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Achn108861 27 YVRYTAEQIEALERVYAECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 84
                5789****************************************************97 PP
2START152.83e-481653712203
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d+  W +++++ e+      g  g+++l +++ 
  Achn108861 165 IAEETLAEFLAKATGTAVDWVQMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPT-KIAEILKDRSSWLRDCRSLEVFTMFPAGngGTIELVYTQI 262
                 7899******************************************************.6667777776***********999999999********** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a++ l+p Rdf+++Ry+  l  g++v++++S++     p+    s++vRae+lpSg+l++p+++g+s +++v+h + ++++++++lr++++s+ + ++
  Achn108861 263 YAPTALAPaRDFWTLRYTTNLDNGSLVVCERSLSGSGAGPNpaaASQFVRAEMLPSGYLVRPCEGGGSIIHIVDHLNFEAWSVPEVLRPFYESSKVVAQ 361
                 **********************************9888888889******************************************************* PP

                 HHHHHHTXXX CS
       START 194 ktwvatlqrq 203
                 k++ a l++ 
  Achn108861 362 KMTIASLRYI 371
                 ***9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003896.2E-152389IPR001356Homeobox domain
SuperFamilySSF466892.91E-162587IPR009057Homeodomain-like
CDDcd000863.82E-162686No hitNo description
PfamPF000463.8E-162784IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-182884IPR009057Homeodomain-like
PROSITE profilePS5007115.1272985IPR001356Homeobox domain
CDDcd146865.62E-678117No hitNo description
PROSITE profilePS5084826.907155383IPR002913START domain
CDDcd088751.86E-67159375No hitNo description
Gene3DG3DSA:3.30.530.202.3E-18164358IPR023393START-like domain
SuperFamilySSF559613.43E-33164376No hitNo description
SMARTSM002344.1E-38164374IPR002913START domain
PfamPF018529.9E-46165372IPR002913START domain
PfamPF086703.7E-48701849IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MAMVVAQQHR ESSSGCIDKH LAAGGKYVRY TAEQIEALER VYAECPKPSS LRRQQLIREC  60
PILANIEPKQ IKVWFQNRRC REKQRKESCQ LQTVNRKLTA MNKLLMEEND RLQKQVSQLV  120
CENGYMRQQL HSASAATTDA SSDSAATTPQ HSLRDANNPA GLLSIAEETL AEFLAKATGT  180
AVDWVQMPGM KPGPDSVGIF AISHSCSGVA ARACGLVSLE PTKIAEILKD RSSWLRDCRS  240
LEVFTMFPAG NGGTIELVYT QIYAPTALAP ARDFWTLRYT TNLDNGSLVV CERSLSGSGA  300
GPNPAAASQF VRAEMLPSGY LVRPCEGGGS IIHIVDHLNF EAWSVPEVLR PFYESSKVVA  360
QKMTIASLRY IRQIAQETSG EVVYGMGRQP AVLRTFSQRL SRGFNDAVNG FNDDGWSIMN  420
CDGTEDVIVA VNSTKSLGLT SSHSNSLPLL GGILCAKASM LLQNVSPAVL IRLLREHRSE  480
WADFNIDAYS ASALKASSFA YPGMRPMRFT GGNPIIMPLG HTIEHEEMLE VIRLEGHSLA  540
QEDAFVSRDI HLLQICSGID EKAVGACSEL VFAPIDEMFP DDAPLLPSGF RISPLDTKPG  600
DTRDTLTAHR TLDLTSSLEV GPAKNSASGE ESSSYNGRSV LTIAFQFPFE NSLLDNIAAM  660
ARQYVRSVIS SVQRVAMAIS PSGLSPTVGP KLSPGSPEAL TLAHWICQSY RHVVLSYHLG  720
TELLRSDSMG GDIVLKHLWH HPDAILCCSL KSLPVFIFAN QAGLDMLETT LVALQDITLD  780
KIFDDSGRKA LYSDFAKIMQ QGFVCLPAGI CMSTMGRHIS YEQAIAWKVL TAEQNTVHCL  840
AFSFMNWSFV *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028072265.10.0homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2R6PF010.0A0A2R6PF01_ACTCH; Homeobox-leucine zipper protein like
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]