PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn108581
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family AP2
Protein Properties Length: 426aa    MW: 47037 Da    PI: 6.7989
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn108581genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-17159208155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Achn108581 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208
                 78*******************......55************************997 PP
2AP240.47.2e-13251297151
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ 
  Achn108581 251 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELEAARAYDKAAI 297
                 89********.7******5553..2.26**********99*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-16159216IPR016177DNA-binding domain
PfamPF008472.7E-9159208IPR001471AP2/ERF domain
PROSITE profilePS5103217.754160216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-17160216IPR001471AP2/ERF domain
CDDcd000186.33E-11160215No hitNo description
SMARTSM003802.2E-31160222IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-15251310IPR016177DNA-binding domain
CDDcd000188.84E-23251308No hitNo description
PfamPF008472.8E-8251296IPR001471AP2/ERF domain
PROSITE profilePS5103214.671252309IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-14252309IPR001471AP2/ERF domain
SMARTSM003801.1E-27252315IPR001471AP2/ERF domain
PRINTSPR003677.8E-5253264IPR001471AP2/ERF domain
PRINTSPR003677.8E-5291311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MLDLNLSVVH NEDDSMEITN KFPEGSEGQM ADSGTSTSSV VNAEGSSNAG DDDSCSTRAP  60
SGGDIVAFNF DILKVGDTSE EGSENRMTQS EFLTRQLFPV RRDGGLATGH SWASSSVSLT  120
NQVDLSFNRA SPNGLQEVRV PQQQQQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC  180
GKQVYLGGFD TAHAAARAYD RAAIKFRGID ADINFNLIDY EEDLKQTKNL TKEEFVHILR  240
RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSELEAAR AYDKAAILNN  300
GREALTNFGP STYEGEMIPE DNAGGRDHNL NLNLGISTPS SGDAQKDHES LRHFPFHPYA  360
VHDARKSNMK NPTETTVGSP TLKGLPMTSD HLPLWVGLYP NFFPICEERA TGKRIEGGSS  420
QGSPN*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028061878.10.0ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK031e-108RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2R6PF360.0A0A2R6PF36_ACTCH; Ethylene-responsive transcription factor like isoform 2
STRINGVIT_06s0004g03590.t011e-176(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-123related to AP2.7