PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn108581 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | AP2 | ||||||||
Protein Properties | Length: 426aa MW: 47037 Da PI: 6.7989 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.5e-17 | 159 | 208 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Achn108581 159 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 208 78*******************......55************************997 PP | |||||||
2 | AP2 | 40.4 | 7.2e-13 | 251 | 297 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ Achn108581 251 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSELEAARAYDKAAI 297 89********.7******5553..2.26**********99*********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-16 | 159 | 216 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.7E-9 | 159 | 208 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.754 | 160 | 216 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-17 | 160 | 216 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.33E-11 | 160 | 215 | No hit | No description |
SMART | SM00380 | 2.2E-31 | 160 | 222 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-15 | 251 | 310 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.84E-23 | 251 | 308 | No hit | No description |
Pfam | PF00847 | 2.8E-8 | 251 | 296 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.671 | 252 | 309 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-14 | 252 | 309 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-27 | 252 | 315 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-5 | 253 | 264 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.8E-5 | 291 | 311 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MLDLNLSVVH NEDDSMEITN KFPEGSEGQM ADSGTSTSSV VNAEGSSNAG DDDSCSTRAP 60 SGGDIVAFNF DILKVGDTSE EGSENRMTQS EFLTRQLFPV RRDGGLATGH SWASSSVSLT 120 NQVDLSFNRA SPNGLQEVRV PQQQQQVKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC 180 GKQVYLGGFD TAHAAARAYD RAAIKFRGID ADINFNLIDY EEDLKQTKNL TKEEFVHILR 240 RQSTGFSRGS SKYRGVTLHK CGRWEARMGQ FLGKKYIYLG LFDSELEAAR AYDKAAILNN 300 GREALTNFGP STYEGEMIPE DNAGGRDHNL NLNLGISTPS SGDAQKDHES LRHFPFHPYA 360 VHDARKSNMK NPTETTVGSP TLKGLPMTSD HLPLWVGLYP NFFPICEERA TGKRIEGGSS 420 QGSPN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00615 | PBM | Transfer from AT2G28550 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028061878.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like | ||||
Swissprot | Q9SK03 | 1e-108 | RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7 | ||||
TrEMBL | A0A2R6PF36 | 0.0 | A0A2R6PF36_ACTCH; Ethylene-responsive transcription factor like isoform 2 | ||||
STRING | VIT_06s0004g03590.t01 | 1e-176 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-123 | related to AP2.7 |