PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn108091
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 664aa    MW: 73008.5 Da    PI: 8.7813
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn108091genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.3e-08564613147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       Achn108091 564 RRPFSVSEVEALVQAVEKLGTGRWRDVKMRAFdnaKHRTYVDLKDKWKTL 613
                      678999********************9776668**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542369.58E-8370456IPR029071Ubiquitin-related domain
PROSITE profilePS500539.069370440IPR000626Ubiquitin domain
PROSITE profilePS5129414.551559618IPR017930Myb domain
SMARTSM007175.3E-8563616IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-10564614IPR009057Homeodomain-like
SuperFamilySSF466895.81E-15565646IPR009057Homeodomain-like
CDDcd116602.44E-17565615No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MVLQNRLGYG FNGYQVPSTP RAARSARRRG SIRKRVDDNQ ICAFDLLATV AGKLLLEGQG  60
SASSSNIQNG KEMCTIVEDS IKKEQQGADK ASKIEICDQG SCGIHHISKE FSHAHIDYCS  120
GLASVITSSD GSDTVDSADK LVDGKNKNQP GNFASKVEVA SSRCESFDGT IENENKEQIN  180
MEVPTTGNAS NSTKADMCSL DDPAVRFRKS PALVSLDNIV TLPLGTDHVH SGSFPACRDD  240
VNLVIRDDDE NSSGCTLPST MKKAFRPSPR IGDRRIRKLL VSKYWKVTPK LKDGENFNAD  300
SETKPVYHNR KTCYKRQRSQ RDYPIKKRIL YDRVSVSNFD GGVSHEDISS SPRKGFSFGA  360
SGSAAMVHGV KLHIKSFKVP ELFIEIPETA TVGSLKRTVM EAVTTILGDG LRVGVLLQGK  420
KIRDDNKTLL QTGISHDNKL DTLGFSLEPS PSQASPPLCH EDHPLLLTCD APQPLTRYPP  480
PPSGVHSAVQ HSTADALSDP PFTNLGNCIE SDHDSAPSPP DMSIDKSPVD SRALVSIPET  540
NVEALAIVPM KKSKRSEAVQ RRIRRPFSVS EVEALVQAVE KLGTGRWRDV KMRAFDNAKH  600
RTYVDLKDKW KTLVHTARIS VQQRRGEPVP QELLDRVLAA HAYWSQQQAK QQLKHQSETF  660
LLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-555516544107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278DRRIRKL
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755189e-36HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028058115.10.0telomere repeat-binding protein 5-like
SwissprotQ6R0E31e-149TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A2R6PFC60.0A0A2R6PFC6_ACTCH; Telomere repeat-binding protein
STRINGVIT_06s0004g04940.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-146TRF-like 2