PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn105191
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 293aa    MW: 32481.2 Da    PI: 4.9903
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn105191genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-102192591055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Achn105191 219 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 259
                 9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.224209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.72E-14209273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-12214266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.07E-11218263No hitNo description
PfamPF000108.4E-8219259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEIVGEEGEW NAFTGMYNPT EEADFMAQLF DNCVIPNELL VKTSGINQPV IYFSDNTNAD  60
SGGADRICLP FLSHESCFVS ESHQFFVMEI LGEDKNTLRS PVEAYPNDSV KGDREMSSGS  120
IHESKASGEE KITNLPANSK KRSRGSGDVQ RKRNVRPKKS ENLVSMEENN ARLNSSSSCS  180
EDDSNGSQEQ NGGVNCSSTS SKGRASRGSA TDPQSLYARK RRERINERLR ILQNLVPNGT  240
KVDISTMLEE AVQYVKFLQL QIKLISSDDL WMYAPIAYNG MDIRLLNITT PK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022762371.16e-83transcription factor bHLH84-like
TrEMBLA0A2R6RGX51e-179A0A2R6RGX5_ACTCH; Transcription factor bHLH85 like
STRINGEOX984632e-77(Theobroma cacao)
STRINGPOPTR_0001s30150.16e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.14e-40bHLH family protein