PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Achn104851 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 223aa MW: 24287.2 Da PI: 6.7448 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 83.4 | 3.3e-26 | 2 | 114 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeer...........edamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++p+++r +++++sl++eA+ r+ +Pv+Gavg++ ++ Achn104851 2 SCNGCRVLRKGCNENCILRQSIqgiesPQAQANATVFVAKFFGRAGLMSFLSSVPHSQRpgfddwfgdlcTALFQSLLFEACGRTVNPVNGAVGLLGTG 100 6************************************************************************************************** PP DUF260 84 qqqleqlkaelall 97 +++++q+++e++l+ Achn104851 101 NWNVCQAAVETVLR 114 ********998875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.189 | 1 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.5E-20 | 2 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MSCNGCRVLR KGCNENCILR QSIQGIESPQ AQANATVFVA KFFGRAGLMS FLSSVPHSQR 60 PGFDDWFGDL CTALFQSLLF EACGRTVNPV NGAVGLLGTG NWNVCQAAVE TVLRGGVLRP 120 IPEYSGDFPA EESDDVSDTN NIDFSGSRDL HVARQKPAAD LGLRPTQEFS ARMTAGGRVK 180 RREETPSFNS DESETTSLES RSAYHQKNLL GRSETKVLRL FF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028125854.1 | 1e-91 | LOB domain-containing protein 37-like | ||||
Swissprot | Q9SN23 | 9e-66 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2R6Q5U8 | 1e-150 | A0A2R6Q5U8_ACTCH; LOB domain-containing protein | ||||
STRING | XP_009795798.1 | 3e-88 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49940.1 | 4e-68 | LOB domain-containing protein 38 |