PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn104681
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 446aa    MW: 49540.6 Da    PI: 5.0708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn104681genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12302347454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +h ++Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI++L
  Achn104681 302 NHVAAERQRREKLNHRFYALRAVVPNV-----SRMEKASLLSDAVSYIQEL 347
                 799***********************6.....4****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-4465219IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.729298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.28E-17300368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.22E-15301352No hitNo description
PfamPF000103.3E-10302347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-17302359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-16304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MEKFWSFPSE NDAEEGYESV SDESSTVMGK RENSENGLRG QCDDGEVEGI FDRLGLKKGE  60
SLTTLQQRLK FIVQSHPEWW AYAIFWKSSK DDKDRPLLAW GDGHFQGTKD AVPKHIATLY  120
ESMDGEVVTD AECFYVMSLS GSFYAGDGVP WKAFSSGSLV WLAGAHQLQF YNCERVKEAQ  180
IHGIQTLVCI PTSCGVVELG SYDVITENWG LVQQAKSLFG SDLIAVPKHP NPSDRSVQFV  240
EGNASFADIG IINGLEEDPM NSESEHSDSD GAVVKERTQQ QQQKTPKKRG RKPGVARETP  300
VNHVAAERQR REKLNHRFYA LRAVVPNVSR MEKASLLSDA VSYIQELKAK VEDLESQVHD  360
PRDFCVPLEV EVKIVGSDAM IRVQSDNANH PTARLMDALR DLELFVHHGS MSSVNDLMLQ  420
DVVIRAPQGW SGEDGLKAAL LKRLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-29642198192Transcription factor MYC3
4rqw_B4e-29642198192Transcription factor MYC3
4rs9_A4e-29642198192Transcription factor MYC3
4yz6_A4e-29642198192Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122222.11e-168transcription factor MYC2-like
TrEMBLA0A2R6R7J20.0A0A2R6R7J2_ACTCH; Transcription factor bHLH14 like
STRINGEOX956141e-165(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-83bHLH family protein