PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn104681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 446aa MW: 49540.6 Da PI: 5.0708 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 302 | 347 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er+RR+++N++f Lr ++P+ +++Ka+ L Av YI++L Achn104681 302 NHVAAERQRREKLNHRFYALRAVVPNV-----SRMEKASLLSDAVSYIQEL 347 799***********************6.....4****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.1E-44 | 65 | 219 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.729 | 298 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.28E-17 | 300 | 368 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.22E-15 | 301 | 352 | No hit | No description |
Pfam | PF00010 | 3.3E-10 | 302 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-17 | 302 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.0E-16 | 304 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MEKFWSFPSE NDAEEGYESV SDESSTVMGK RENSENGLRG QCDDGEVEGI FDRLGLKKGE 60 SLTTLQQRLK FIVQSHPEWW AYAIFWKSSK DDKDRPLLAW GDGHFQGTKD AVPKHIATLY 120 ESMDGEVVTD AECFYVMSLS GSFYAGDGVP WKAFSSGSLV WLAGAHQLQF YNCERVKEAQ 180 IHGIQTLVCI PTSCGVVELG SYDVITENWG LVQQAKSLFG SDLIAVPKHP NPSDRSVQFV 240 EGNASFADIG IINGLEEDPM NSESEHSDSD GAVVKERTQQ QQQKTPKKRG RKPGVARETP 300 VNHVAAERQR REKLNHRFYA LRAVVPNVSR MEKASLLSDA VSYIQELKAK VEDLESQVHD 360 PRDFCVPLEV EVKIVGSDAM IRVQSDNANH PTARLMDALR DLELFVHHGS MSSVNDLMLQ 420 DVVIRAPQGW SGEDGLKAAL LKRLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 4e-29 | 64 | 219 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 4e-29 | 64 | 219 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 4e-29 | 64 | 219 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 4e-29 | 64 | 219 | 8 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028122222.1 | 1e-168 | transcription factor MYC2-like | ||||
TrEMBL | A0A2R6R7J2 | 0.0 | A0A2R6R7J2_ACTCH; Transcription factor bHLH14 like | ||||
STRING | EOX95614 | 1e-165 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 2e-83 | bHLH family protein |