PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn104531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | WOX | ||||||||
Protein Properties | Length: 256aa MW: 27792.9 Da PI: 6.016 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 48.2 | 1.8e-15 | 27 | 87 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Achn104531 27 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgTVGDANVFYWFQNRRSRSRR 87 89*****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 107.4 | 8.7e-35 | 26 | 89 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Achn104531 26 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQ 89 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.24 | 23 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-14 | 23 | 94 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-8 | 24 | 92 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.5E-6 | 25 | 92 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.4E-13 | 27 | 87 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MEEDANHPNS PISSSGGGDQ RNNEPVRSRW TPKPEQILIL ESIFNSGMVN PPKDETVRIR 60 KLLEKFGTVG DANVFYWFQN RRSRSRRRQR QIQASLAAAA GEQQQQMSHT QSYCDSGSGA 120 IYYQYESGSG SGSGSVPGFV VGPSSSSCST VDDLFTYSAE MGLPGVEQNS SMDSILCPSN 180 TSNLQYQSGI MTVFINGVAT EVGRGPIDMR GMFGEAVVLV HSSGIPVPVN EYGFSAHSLQ 240 HGESYFLVCM LVRLR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022743818.1 | 1e-90 | WUSCHEL-related homeobox 11-like | ||||
Swissprot | Q6X7J3 | 8e-69 | WOX11_ARATH; WUSCHEL-related homeobox 11 | ||||
TrEMBL | A0A2R6R7L6 | 0.0 | A0A2R6R7L6_ACTCH; WUSCHEL-related homeobox like | ||||
STRING | XP_002525671.1 | 5e-87 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6166 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03660.1 | 3e-35 | WUSCHEL related homeobox 11 |
Publications ? help Back to Top | |||
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