PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn104421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | bHLH | ||||||||
Protein Properties | Length: 580aa MW: 64744.1 Da PI: 7.6397 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.5e-13 | 414 | 460 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq Achn104421 414 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 460 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 3.8E-53 | 31 | 219 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.85 | 410 | 459 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.95E-13 | 413 | 464 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-18 | 413 | 474 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.2E-10 | 414 | 460 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-18 | 414 | 472 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-16 | 416 | 465 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 580 aa Download sequence Send to blast |
MAVAVLGNRA FDYLMSSSVS AECSLMSDEN LQNKLSDLVD HLNSANFSWN YAFFWQISRS 60 KAGDLVLGWG DGSCREPKGG EECEVTRIAD FRVEEEIQQR MRKRVLQKLH KLFEGLDEDS 120 YAFGLDRVTD TEMFFLASMY FSFPRGEGGP GKIFASGKHI WLSDLLKTSF EYCVRSFLAR 180 SAGIQTIVLI PTDVGVVEFG SVRSIPESLE LVQSIGSSFS SFSSRLMVKP MTTVPVMSEK 240 KDVNAQISNL GKGIPKIFGQ DLSSGRSQFR EKLAIRKPEE RPPEAYSNRN QSPLPNARNG 300 LNGSGWTQFH SVKQAATAEI YSPRTHNNLR QLANGVRDEF RLNHYQPQKA ASMQIDFTGG 360 ATSRPSLISR PVSVESEHSD VEASGKDELA GPVDDKRPRK RGRKPANGRE EPLNHVEAER 420 QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITELQ KKLKDMESER ESFVSAPRES 480 LDLEANPNSE NQSQVPEIEI QAVHDEVVVR VSCPMNTHPV SRVIQAFKEA QITVVESKLA 540 TGNDTIFHTF VIKSQGSERL TKERLVAAFS RESNSLQPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-29 | 408 | 470 | 2 | 64 | Transcription factor MYC2 |
5gnj_B | 4e-29 | 408 | 470 | 2 | 64 | Transcription factor MYC2 |
5gnj_E | 4e-29 | 408 | 470 | 2 | 64 | Transcription factor MYC2 |
5gnj_F | 4e-29 | 408 | 470 | 2 | 64 | Transcription factor MYC2 |
5gnj_G | 4e-29 | 408 | 470 | 2 | 64 | Transcription factor MYC2 |
5gnj_I | 4e-29 | 408 | 470 | 2 | 64 | Transcription factor MYC2 |
5gnj_M | 4e-29 | 408 | 470 | 2 | 64 | Transcription factor MYC2 |
5gnj_N | 4e-29 | 408 | 470 | 2 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 395 | 403 | KRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028081876.1 | 0.0 | transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7ELQ2 | 0.0 | MTB1_SOLLC; Transcription factor MTB1 | ||||
TrEMBL | A0A2R6R7J8 | 0.0 | A0A2R6R7J8_ACTCH; Transcription factor bHLH13 like | ||||
STRING | VIT_15s0046g00320.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3585 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 1e-167 | bHLH family protein |
Publications ? help Back to Top | |||
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