PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn104421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 580aa    MW: 64744.1 Da    PI: 7.6397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn104421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.5e-13414460455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Achn104421 414 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 460
                 799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.8E-5331219IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85410459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-13413464No hitNo description
SuperFamilySSF474592.22E-18413474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-10414460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-18414472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-16416465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MAVAVLGNRA FDYLMSSSVS AECSLMSDEN LQNKLSDLVD HLNSANFSWN YAFFWQISRS  60
KAGDLVLGWG DGSCREPKGG EECEVTRIAD FRVEEEIQQR MRKRVLQKLH KLFEGLDEDS  120
YAFGLDRVTD TEMFFLASMY FSFPRGEGGP GKIFASGKHI WLSDLLKTSF EYCVRSFLAR  180
SAGIQTIVLI PTDVGVVEFG SVRSIPESLE LVQSIGSSFS SFSSRLMVKP MTTVPVMSEK  240
KDVNAQISNL GKGIPKIFGQ DLSSGRSQFR EKLAIRKPEE RPPEAYSNRN QSPLPNARNG  300
LNGSGWTQFH SVKQAATAEI YSPRTHNNLR QLANGVRDEF RLNHYQPQKA ASMQIDFTGG  360
ATSRPSLISR PVSVESEHSD VEASGKDELA GPVDDKRPRK RGRKPANGRE EPLNHVEAER  420
QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITELQ KKLKDMESER ESFVSAPRES  480
LDLEANPNSE NQSQVPEIEI QAVHDEVVVR VSCPMNTHPV SRVIQAFKEA QITVVESKLA  540
TGNDTIFHTF VIKSQGSERL TKERLVAAFS RESNSLQPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-29408470264Transcription factor MYC2
5gnj_B4e-29408470264Transcription factor MYC2
5gnj_E4e-29408470264Transcription factor MYC2
5gnj_F4e-29408470264Transcription factor MYC2
5gnj_G4e-29408470264Transcription factor MYC2
5gnj_I4e-29408470264Transcription factor MYC2
5gnj_M4e-29408470264Transcription factor MYC2
5gnj_N4e-29408470264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1395403KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028081876.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A2R6R7J80.0A0A2R6R7J8_ACTCH; Transcription factor bHLH13 like
STRINGVIT_15s0046g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-167bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]