PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn104221
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 445aa    MW: 50410.9 Da    PI: 6.1964
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn104221genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.6e-52431711128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd++ k+k     +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk +++ +
  Achn104221  43 VPPGFRFHPTEEELLQYYLRKKVSYEKIDL-DVIRDVDLNKLEPWDIQDKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKVIYC-N 139
                 69****************************.9***************954444122455**************************************.9 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                 ++ +g++ktLvfykgrap+g+k+dW+mheyrl
  Achn104221 140 SKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 171
                 999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.55E-5837207IPR003441NAC domain
PROSITE profilePS5100555.94843207IPR003441NAC domain
PfamPF023651.9E-2744171IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MLPFVAVVAQ NTNESYWTGG VSFSKDIIMP ENMSISVNGQ SQVPPGFRFH PTEEELLQYY  60
LRKKVSYEKI DLDVIRDVDL NKLEPWDIQD KCKIGSTPQN DWYFFSHKDK KYPTGTRTNR  120
ATSAGFWKAT GRDKVIYCNS KRIGMRKTLV FYKGRAPHGQ KSDWIMHEYR LDDNVPATDP  180
IHTTNVYDAT GEATQEEGWV VCRIFKKKNH HKNLDSPIQM NSAAIHNYVE SRSQIPTSSS  240
SEEAGTLEEI LGRTCKKEGT DQASSSTSPG FLLPIDRYTK LPCLESPTYY SMHMMSSQPS  300
YHGQQIRVDD VDHRYPNNSV ANINYPLETS LGDWTSLDRL VASQLNGQTE TSKQLAFFNE  360
SNTAFCFTTT PYDDHDHDHE DHNSLQLQQQ LGSSSSNRPL HHDHGMQVQD DTVNNSEFDL  420
WSFTRSSITS SADVPLCHAS IAPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-464020914167NO APICAL MERISTEM PROTEIN
1ut4_B1e-464020914167NO APICAL MERISTEM PROTEIN
1ut7_A1e-464020914167NO APICAL MERISTEM PROTEIN
1ut7_B1e-464020914167NO APICAL MERISTEM PROTEIN
3swm_A1e-464020917170NAC domain-containing protein 19
3swm_B1e-464020917170NAC domain-containing protein 19
3swm_C1e-464020917170NAC domain-containing protein 19
3swm_D1e-464020917170NAC domain-containing protein 19
3swp_A1e-464020917170NAC domain-containing protein 19
3swp_B1e-464020917170NAC domain-containing protein 19
3swp_C1e-464020917170NAC domain-containing protein 19
3swp_D1e-464020917170NAC domain-containing protein 19
4dul_A1e-464020914167NAC domain-containing protein 19
4dul_B1e-464020914167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028122191.11e-166NAC domain-containing protein 43-like
SwissprotQ84WP61e-126NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A2R6R7G30.0A0A2R6R7G3_ACTCH; NAC domain-containing protein
STRINGEOX955981e-155(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-128NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]