PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn104221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | NAC | ||||||||
Protein Properties | Length: 445aa MW: 50410.9 Da PI: 6.1964 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.8 | 3.6e-52 | 43 | 171 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi++vd++k+ePwd++ k+k +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk +++ + Achn104221 43 VPPGFRFHPTEEELLQYYLRKKVSYEKIDL-DVIRDVDLNKLEPWDIQDKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATSAGFWKATGRDKVIYC-N 139 69****************************.9***************954444122455**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g++ktLvfykgrap+g+k+dW+mheyrl Achn104221 140 SKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 171 999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.55E-58 | 37 | 207 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.948 | 43 | 207 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-27 | 44 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MLPFVAVVAQ NTNESYWTGG VSFSKDIIMP ENMSISVNGQ SQVPPGFRFH PTEEELLQYY 60 LRKKVSYEKI DLDVIRDVDL NKLEPWDIQD KCKIGSTPQN DWYFFSHKDK KYPTGTRTNR 120 ATSAGFWKAT GRDKVIYCNS KRIGMRKTLV FYKGRAPHGQ KSDWIMHEYR LDDNVPATDP 180 IHTTNVYDAT GEATQEEGWV VCRIFKKKNH HKNLDSPIQM NSAAIHNYVE SRSQIPTSSS 240 SEEAGTLEEI LGRTCKKEGT DQASSSTSPG FLLPIDRYTK LPCLESPTYY SMHMMSSQPS 300 YHGQQIRVDD VDHRYPNNSV ANINYPLETS LGDWTSLDRL VASQLNGQTE TSKQLAFFNE 360 SNTAFCFTTT PYDDHDHDHE DHNSLQLQQQ LGSSSSNRPL HHDHGMQVQD DTVNNSEFDL 420 WSFTRSSITS SADVPLCHAS IAPV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-46 | 40 | 209 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-46 | 40 | 209 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-46 | 40 | 209 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-46 | 40 | 209 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-46 | 40 | 209 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-46 | 40 | 209 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-46 | 40 | 209 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-46 | 40 | 209 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-46 | 40 | 209 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-46 | 40 | 209 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-46 | 40 | 209 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-46 | 40 | 209 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-46 | 40 | 209 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-46 | 40 | 209 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028122191.1 | 1e-166 | NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-126 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A2R6R7G3 | 0.0 | A0A2R6R7G3_ACTCH; NAC domain-containing protein | ||||
STRING | EOX95598 | 1e-155 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA134 | 24 | 297 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-128 | NAC family protein |