PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn104121
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 400aa    MW: 45370.4 Da    PI: 4.5335
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn104121genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1132e-35141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye+++d+++++++sws+n++sf+v+++ ef++++Lpk+Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+ +ll++i 
    Achn104121  14 FLAKTYEMVDDPSTDSVVSWSQNNKSFIVWNPPEFTRDMLPKFFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANDDFIRGQPQLLKNIY 101
                   9***************************************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    Achn104121 102 RRKP 105
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.6E-38498IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.77E-3510103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-201437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-205264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDEAQCSSTA LPPFLAKTYE MVDDPSTDSV VSWSQNNKSF IVWNPPEFTR DMLPKFFKHN  60
NFSSFIRQLN TYGFRKVDPE QWEFANDDFI RGQPQLLKNI YRRKPVHSHS LQNQQGQGTT  120
ASLLTESERQ SYKDEIERLR CDNESLLLEL GRHEQEQQEI DLQTRVLSER VQHVDQTQKN  180
MLSSLAQTFQ KPGLAMDFVP HSEIRERKRR LHDESSNEDD YRGTSQIVSR ENLNATSVMV  240
LNKDSLAQLE SSLMFWDSII RDVGLSCIVQ NSSPELDEST SCADSPTISY TLLNIDIGSK  300
TCGIDMNSEP AAPVVPGIAA SEEQVVRSVA TVPTGVNDVF WEQFLTENPG SSNVLEVQSE  360
IKDLDDQKNE SIHGKFWWNT RNANCLAEQL GQLTPAERT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-241110326129Heat shock factor protein 1
5d5v_B2e-241110326129Heat shock factor protein 1
5d5v_D2e-241110326129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205210ERKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028056900.10.0heat stress transcription factor A-4a-like
SwissprotO494031e-109HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A2R6RG860.0A0A2R6RG86_ACTCH; Heat stress transcription factor A-4a like
STRINGevm.model.supercontig_124.41e-176(Carica papaya)
STRINGPOPTR_0011s06820.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-111heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]