PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Achn102611 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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Family | CAMTA | ||||||||
Protein Properties | Length: 1220aa MW: 134515 Da PI: 7.2009 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 141.5 | 2.5e-44 | 239 | 334 | 23 | 118 |
CG-1 23 kheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 ++ ++ + k gsl+L++rk++ryfrkDG+sw+kkkdgktv+E+hekLK g+v+vl+cyYah+e+n++fqrr+yw+L+eel++ivlvhy+evk Achn102611 239 AFQTVSFDAVVDKAGSLFLFDRKVLRYFRKDGHSWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNKNFQRRSYWMLDEELDNIVLVHYREVK 334 55555555666789*******************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF16093 | 9.3E-12 | 56 | 121 | IPR032157 | Proteasome assembly chaperone 4 |
Gene3D | G3DSA:3.30.56.30 | 9.0E-16 | 116 | 176 | IPR002778 | Signal recognition particle, SRP19 subunit |
Pfam | PF01922 | 1.0E-9 | 116 | 165 | IPR002778 | Signal recognition particle, SRP19 subunit |
SuperFamily | SSF69695 | 1.1E-9 | 117 | 168 | IPR002778 | Signal recognition particle, SRP19 subunit |
Gene3D | G3DSA:3.40.50.150 | 1.7E-9 | 191 | 318 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SuperFamily | SSF53335 | 6.32E-7 | 194 | 264 | IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
SMART | SM01076 | 4.9E-49 | 217 | 334 | IPR005559 | CG-1 DNA-binding domain |
PROSITE profile | PS51437 | 59.651 | 225 | 339 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 9.7E-37 | 251 | 332 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.5E-5 | 653 | 741 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.75E-17 | 654 | 740 | IPR014756 | Immunoglobulin E-set |
CDD | cd00102 | 0.00109 | 654 | 742 | No hit | No description |
Pfam | PF01833 | 2.9E-4 | 657 | 740 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 6.22E-15 | 847 | 953 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.77E-13 | 847 | 950 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 3.3E-15 | 852 | 953 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.539 | 858 | 962 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0094 | 891 | 923 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.873 | 891 | 923 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 540 | 930 | 959 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 47 | 1012 | 1034 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.06E-7 | 1057 | 1117 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 0.82 | 1066 | 1088 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.773 | 1067 | 1096 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0087 | 1068 | 1087 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 5.7E-4 | 1089 | 1111 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.834 | 1090 | 1118 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 1.0E-4 | 1091 | 1111 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.437 | 1171 | 1199 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006614 | Biological Process | SRP-dependent cotranslational protein targeting to membrane | ||||
GO:0043248 | Biological Process | proteasome assembly | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0048500 | Cellular Component | signal recognition particle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008312 | Molecular Function | 7S RNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1220 aa Download sequence Send to blast |
MAPGRSDVKS PEHGTPIVEE DFVVDGVDRL GIGSSSNEEE DGVQVTCFTD VVDDVTLHFQ 60 IIRLHKQIYA WIGCNSAKFG HLYAAAPTRP NNTVSVTNIL GGASDNTGSG IVRRLAIKID 120 KAYPRDFMQR GRVRVLLKKD DGTLFNPAIS SRKQLMLSVA ELVPRHPGRT KKQEPAASTS 180 GAGPAKSGKA FSEGMVDDGY VDVVNIDISS VAIEAIMRKK CSNRPQLKYI KMDVRDMSAF 240 QTVSFDAVVD KAGSLFLFDR KVLRYFRKDG HSWRKKKDGK TVKEAHEKLK AGSVDVLHCY 300 YAHGEDNKNF QRRSYWMLDE ELDNIVLVHY REVKEGSKLC VSHLLNADPG SQLGSSQTSS 360 SPCLEQTNSP ILTVQMSNAS SPNAVDWSEQ SLSSEFEDRD YGEDPGISSL ARHGSVSYNA 420 SLLADSATAS SEARLIPCGL VGGLLISIRS SQVSIWPEIV SSEFCTVSSD CGYLELSRDQ 480 IDPASVGGGF HHEAGSSMWA DVHGSSGNLH SMHDQKFHFQ QLNAADFLTH KLIDAKLDAD 540 NTTQDVVNGG NMLIPYGQIV AQEKIPYAAK VDSQVGRASN DEAGELKKLD SFGKWMDKNI 600 GGDCDDSLMA SDSCNYWNTL DTENDKEVSS LSRHMQLNID ELGPSVILQE QLFTICDFAP 660 DWAYTGVETK VLITGTFLGD TKHSGSFKWC CMFGEIEVSA EVLTDNVMRC QVPFHAPGRV 720 PLYITCSNRL ACSEVREFEY LERSPEAVSS AIVKTAPKDE VLFQVRLTKM LDVGSERKWL 780 DCSVVGCDKC KLKKNINSLK TKSKIQSEMI ENDIVFFEGY NVSLADSLIQ NLLKGKLYEW 840 LICKVHEGGK GPHILDEEGQ GVIHLAAALG FEWAMCPIVA SSVSPNFRDV RGRTALHWAS 900 YYGREETVVA LVRLGAAAGA VDDPTSASPG GQTAADLASS RGHKGIAGYL AEADLTSHLS 960 SLTLGENSME SAAATIAAEK ATETAAQNNV LSTGMAVNEE HSLSGSLAAV RKSSHAAALI 1020 QAAFRARSFR HRQQTKSNNE ISETSLDLVT LGLLNKVQKV SHFEDYLHSA AIRIQQKYRG 1080 WKGRREFLKI RKRIVKIQAH VRGHQVRKQY KKVVWSVSIV EKAILRWRRK RHGLRGFRME 1140 KTNENGVPET EKCDEYEFLR IGRRQKIAGV EKALARVQSM VRHPEARDQY MRLVKKYEDC 1200 KLSNEATSAS GLVPGTEER* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028068006.1 | 0.0 | calmodulin-binding transcription activator 2-like isoform X1 | ||||
TrEMBL | A0A2R6PVW8 | 0.0 | A0A2R6PVW8_ACTCH; Calmodulin-binding transcription activator 3 like | ||||
STRING | VIT_05s0020g00630.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13716 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 1e-142 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |