PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn102611
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family CAMTA
Protein Properties Length: 1220aa    MW: 134515 Da    PI: 7.2009
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn102611genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1141.52.5e-4423933423118
        CG-1  23 kheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                  ++ ++  +   k gsl+L++rk++ryfrkDG+sw+kkkdgktv+E+hekLK g+v+vl+cyYah+e+n++fqrr+yw+L+eel++ivlvhy+evk
  Achn102611 239 AFQTVSFDAVVDKAGSLFLFDRKVLRYFRKDGHSWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNKNFQRRSYWMLDEELDNIVLVHYREVK 334
                 55555555666789*******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF160939.3E-1256121IPR032157Proteasome assembly chaperone 4
Gene3DG3DSA:3.30.56.309.0E-16116176IPR002778Signal recognition particle, SRP19 subunit
PfamPF019221.0E-9116165IPR002778Signal recognition particle, SRP19 subunit
SuperFamilySSF696951.1E-9117168IPR002778Signal recognition particle, SRP19 subunit
Gene3DG3DSA:3.40.50.1501.7E-9191318IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SuperFamilySSF533356.32E-7194264IPR029063S-adenosyl-L-methionine-dependent methyltransferase
SMARTSM010764.9E-49217334IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143759.651225339IPR005559CG-1 DNA-binding domain
PfamPF038599.7E-37251332IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.5E-5653741IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.75E-17654740IPR014756Immunoglobulin E-set
CDDcd001020.00109654742No hitNo description
PfamPF018332.9E-4657740IPR002909IPT domain
SuperFamilySSF484036.22E-15847953IPR020683Ankyrin repeat-containing domain
CDDcd002044.77E-13847950No hitNo description
Gene3DG3DSA:1.25.40.203.3E-15852953IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.539858962IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0094891923IPR002110Ankyrin repeat
PROSITE profilePS5008810.873891923IPR002110Ankyrin repeat
SMARTSM00248540930959IPR002110Ankyrin repeat
SMARTSM000154710121034IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.06E-710571117IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.8210661088IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.77310671096IPR000048IQ motif, EF-hand binding site
PfamPF006120.008710681087IPR000048IQ motif, EF-hand binding site
SMARTSM000155.7E-410891111IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.83410901118IPR000048IQ motif, EF-hand binding site
PfamPF006121.0E-410911111IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.43711711199IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006614Biological ProcessSRP-dependent cotranslational protein targeting to membrane
GO:0043248Biological Processproteasome assembly
GO:0005634Cellular Componentnucleus
GO:0048500Cellular Componentsignal recognition particle
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008312Molecular Function7S RNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1220 aa     Download sequence    Send to blast
MAPGRSDVKS PEHGTPIVEE DFVVDGVDRL GIGSSSNEEE DGVQVTCFTD VVDDVTLHFQ  60
IIRLHKQIYA WIGCNSAKFG HLYAAAPTRP NNTVSVTNIL GGASDNTGSG IVRRLAIKID  120
KAYPRDFMQR GRVRVLLKKD DGTLFNPAIS SRKQLMLSVA ELVPRHPGRT KKQEPAASTS  180
GAGPAKSGKA FSEGMVDDGY VDVVNIDISS VAIEAIMRKK CSNRPQLKYI KMDVRDMSAF  240
QTVSFDAVVD KAGSLFLFDR KVLRYFRKDG HSWRKKKDGK TVKEAHEKLK AGSVDVLHCY  300
YAHGEDNKNF QRRSYWMLDE ELDNIVLVHY REVKEGSKLC VSHLLNADPG SQLGSSQTSS  360
SPCLEQTNSP ILTVQMSNAS SPNAVDWSEQ SLSSEFEDRD YGEDPGISSL ARHGSVSYNA  420
SLLADSATAS SEARLIPCGL VGGLLISIRS SQVSIWPEIV SSEFCTVSSD CGYLELSRDQ  480
IDPASVGGGF HHEAGSSMWA DVHGSSGNLH SMHDQKFHFQ QLNAADFLTH KLIDAKLDAD  540
NTTQDVVNGG NMLIPYGQIV AQEKIPYAAK VDSQVGRASN DEAGELKKLD SFGKWMDKNI  600
GGDCDDSLMA SDSCNYWNTL DTENDKEVSS LSRHMQLNID ELGPSVILQE QLFTICDFAP  660
DWAYTGVETK VLITGTFLGD TKHSGSFKWC CMFGEIEVSA EVLTDNVMRC QVPFHAPGRV  720
PLYITCSNRL ACSEVREFEY LERSPEAVSS AIVKTAPKDE VLFQVRLTKM LDVGSERKWL  780
DCSVVGCDKC KLKKNINSLK TKSKIQSEMI ENDIVFFEGY NVSLADSLIQ NLLKGKLYEW  840
LICKVHEGGK GPHILDEEGQ GVIHLAAALG FEWAMCPIVA SSVSPNFRDV RGRTALHWAS  900
YYGREETVVA LVRLGAAAGA VDDPTSASPG GQTAADLASS RGHKGIAGYL AEADLTSHLS  960
SLTLGENSME SAAATIAAEK ATETAAQNNV LSTGMAVNEE HSLSGSLAAV RKSSHAAALI  1020
QAAFRARSFR HRQQTKSNNE ISETSLDLVT LGLLNKVQKV SHFEDYLHSA AIRIQQKYRG  1080
WKGRREFLKI RKRIVKIQAH VRGHQVRKQY KKVVWSVSIV EKAILRWRRK RHGLRGFRME  1140
KTNENGVPET EKCDEYEFLR IGRRQKIAGV EKALARVQSM VRHPEARDQY MRLVKKYEDC  1200
KLSNEATSAS GLVPGTEER*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068006.10.0calmodulin-binding transcription activator 2-like isoform X1
TrEMBLA0A2R6PVW80.0A0A2R6PVW8_ACTCH; Calmodulin-binding transcription activator 3 like
STRINGVIT_05s0020g00630.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA137161011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-142Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains